MmuALTA1019003-3/6 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000028864 | Hgf
Description
hepatocyte growth factor [Source:MGI Symbol;Acc:MGI:96079]
Coordinates
chr5:16553495-16554018:+
Coord C1 exon
chr5:16553495-16553644
Coord A exon
chr5:16553873-16553900
Coord C2 exon
chr5:16553901-16554018
Length
28 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
AACCGACCGGTTTGCAACAGGAT
3' ss Score
4.93
Exon sequences
Seq C1 exon
AAACGGGGCGAATTGGTGTTCTGCCTGTGCCTTGACTTAGCGATTGGGCTGAGCCTTGCTCCTCCCTTCCCTACTCGGATAGGAGCCACAAGGATCTGGAGCTCCAGCTTCCAAATTGCAGCTGGCCTCGGGCCAGGTGACCTTTGCTTT
Seq A exon
GATTCTTTCAGCCCGGCATCTCCTGCAG
Seq C2 exon
AGGGATCAGTCTGCTCGAACTGCAAGCATGATGTGGGGGACCAAACTTCTGCCGGTCCTGTTGCTGCAGCATGTCCTCCTGCACCTCCTCCTGCTTCATGTCGCCATCCCCTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028864-0-7,0-6,0-5,0-4,0-3,0-2-3/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCCTTCCCTACTCGGAT
R:
GCAGTTCGAGCAGACTGATCC
Band lengths:
114-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types