HsaALTA0003982-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000019991 | HGF
Description
hepatocyte growth factor [Source:HGNC Symbol;Acc:HGNC:4893]
Coordinates
chr7:81769884-81770398:-
Coord C1 exon
chr7:81770291-81770398
Coord A exon
chr7:81770014-81770028
Coord C2 exon
chr7:81769884-81770013
Length
15 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
TAGGCACTGACTCCGAACAGGAT
3' ss Score
3.68
Exon sequences
Seq C1 exon
ATTGGGCTCAGCCTTGCTCCTCCCTTCCTTACTCGGATAGGAGCCACTGGGATCTGGAGCTCCAGCTTCCAAATTGAAGCTGGCCTCAGGCCAGGTGACCTTTTCTTT
Seq A exon
GATTCTTTCACCCAG
Seq C2 exon
GCATCTCCTCCAGAGGGATCCGCCAGCCCGTCCAGCAGCACCATGTGGGTGACCAAACTCCTGCCAGCCCTGCTGCTGCAGCATGTCCTCCTGCATCTCCTCCTGCTCCCCATCGCCATCCCCTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000019991-0-7,0-5,0-3-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAATTGAAGCTGGCCTCA
R:
GGAGTTTGGTCACCCACATGG
Band lengths:
102-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains