HsaALTA0004005-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000127124 | HIVEP3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:HGNC Symbol;Acc:HGNC:13561]
Coordinates
chr1:41511163-41513750:-
Coord C1 exon
chr1:41512816-41513750
Coord A exon
chr1:41511264-41511266
Coord C2 exon
chr1:41511163-41511263
Length
3 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GTCTTGTTTTCTGACCCCAGCAG
3' ss Score
5.62
Exon sequences
Seq C1 exon
GGTCCCCAAGCAAAGAAGCAGGCAGCCGTCCACCACTAGCCCGCAAACACTCGCTAACCAAAAACGACTCATCTCCCCAGCGATGCTCCCCGGCCCGAGAACCACAGGCCTCAGCCCCAAGCCCACCTGGCCTGCACGTGGACCCAGGAAGGGGCATGGGCGCTCTCCCTTGTGGGTCTCCAAGACTTCAGCTGTCTCCTCTCACCCTCTGCCCCCTGGGAAGAGAACTGGCCCCTCGAGCACATGTGCTCTCCAAACTCGAGGGTACCACCGACCCAGGCCTCCCCAGATACTCGCCCACCAGGAGATGGTCTCCAGGTCAGGCCGAGTCACCACCACGGTCAGCGCCGCCAGGGAAGTGGGCCTTGGCTGGGCCGGGCAGCCCCTCAGCGGGGGAGCATGGCCCAGGCTTGGGGCTGGACCCACGGGTTCTCTTCCCGCCCGCGCCTCTACCTCACAAGCTCCTCAGCAGAAGCCCAGAGACCTGCGCCTCCCCGTGG
Seq A exon
CAG
Seq C2 exon
AAGGCCGAGTCCCGAAGTCCCTCCTGCTCACCCGGCCCTGCTCATCCTCTCTCCTCCCGACCCTTCTCCGCCCTCCATGACTTCCACGGCCACATCCTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127124-36-44,36-43-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.953 A=NA C2=0.897
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCAGCAGAAGCCCAGAG
R:
GAGGAGAGAGGATGAGCAGGG
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development