HsaINT0076338 @ hg38
Intron Retention
Gene
ENSG00000127124 | HIVEP3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:HGNC Symbol;Acc:HGNC:13561]
Coordinates
chr1:41506365-41513750:-
Coord C1 exon
chr1:41512816-41513750
Coord A exon
chr1:41511264-41512815
Coord C2 exon
chr1:41506365-41511263
Length
1552 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTGTTTTCTGACCCCAGCAGAAG
3' ss Score
4.93
Exon sequences
Seq C1 exon
GAACCAGTGACGACCTGTTCCAGGACTCGGAAGGACGAGAGGGTTCAGAGGCTGTGGAGGAGCACCAGTTTTCGGACCTGGAGGACTCGGACTCAGACTCAGACCTGGACGAAGACGAGGATGAGGATGAGGAGGAGAGCCAGGATGAGCTGTCCAGACCATCCTCAGAGGCGCCCCCGCCTGGCCCACCACATGCACTGCGGGCAGACTCCTCACCCATCCTGGGCCCTCAGCCCCCAGATGCCCCCGCCTCTGGCACGGAGGCTACACGAGGCAGCTCGGTCTCGGAAGCTGAGCGCCTGACAGCCAGCAGCTGCTCCATGTCCAGCCAGAGCATGCCGGGCCTCCCCTGGCTGGGACCGGCCCCTCTGGGCTCTGTGGAGAAAGACACAGGCTCAGCCTTGAGCTACAAGCCTGTGTCCCCAAGAAGACCGTGGTCCCCAAGCAAAGAAGCAGGCAGCCGTCCACCACTAGCCCGCAAACACTCGCTAACCAAAAACGACTCATCTCCCCAGCGATGCTCCCCGGCCCGAGAACCACAGGCCTCAGCCCCAAGCCCACCTGGCCTGCACGTGGACCCAGGAAGGGGCATGGGCGCTCTCCCTTGTGGGTCTCCAAGACTTCAGCTGTCTCCTCTCACCCTCTGCCCCCTGGGAAGAGAACTGGCCCCTCGAGCACATGTGCTCTCCAAACTCGAGGGTACCACCGACCCAGGCCTCCCCAGATACTCGCCCACCAGGAGATGGTCTCCAGGTCAGGCCGAGTCACCACCACGGTCAGCGCCGCCAGGGAAGTGGGCCTTGGCTGGGCCGGGCAGCCCCTCAGCGGGGGAGCATGGCCCAGGCTTGGGGCTGGACCCACGGGTTCTCTTCCCGCCCGCGCCTCTACCTCACAAGCTCCTCAGCAGAAGCCCAGAGACCTGCGCCTCCCCGTGG
Seq A exon
GTGAGTTCCTGCCCCTGGTGGCTGGGCCGCTTCTCCCCTGTGGGTGCAGGGGTTGCAAGTTCACACCCTCCTGGGTATCACACCTGGAACTAAACAGCTCTGCCAGCTCAGTAGTTATTAATAATTTCGCAAACATTTATTAGGCACCTACTGTGCCATGCACCATGCTGGCTGCCCTAAATCAGCTGGCTTATTAAACTTTATTTTAGCCTCAGAAGCACAGAGCATGGACTCTGGAGTTCATGGGAAATGGGTTCTACCACGTATTAGTCCGTTCTTGTATTGCTATAAACAAATTCCTGAGACTGGGTAATTTATAATGAAAAGAGGTTGAATAGGCTCACAGTTCTTCAGGCTGTACAGGAAGCGTGGTGCCAGCATCTGCTCGGCTTCTGGGGAGGCCTCAAGCAGCTTTTACTCATGGCAGAAGGCAAAGCGGGAACAGGCATCTCACATGGCAGAGTGGAAGCAAGAGAGAGAGTTGGGGGAAAGGTGCCACACGCTCAAAATGCCAGATCTCATGAGAAATCACTATCTGGAGGACAGTATCAGGCCCTGAGGGATCCGTCCCCATGACCCAAACACCTCCCACCAGGCCCACCTCTAACACTGGGGTTTACAATTCAACACGAGATTTGGGCGGGGACAAATATCCAAACGATATCATATCACTTGCAAGGGGTGTGGCCTTGGATGAGGTTGTAAATACTCGTGCAATTCCCCATCCCCCACCCCATCCCCATCTGCCTGTGTTCTTTGAGCAGATGGCACAACTTAACCAAAACCATCACCATCTCCAATATCACTGTCACCAGTGCTCTCAGAGACACCACAACCAATATCATCCTTGTCAACCATCAGCACTATCCCCATGGCCAGCACCACCACTGTCACCATTGCACCAACACACCACTGCTGCCACCCCATGAGCACAGTCACCATCCCTGTCCCCTCAGCTGCCATGACCCCTCCACCGATAGCACCATCATTGTCAGCTGACCCCCTTCCGACACCTTCTCTGTCCCCGTGTTGCCATGACCCAGCCCTGTCACTCCTGGAGGAACACTGATCTAGGAATCTTTCCTTGATTTTTAATTTTGGGTTCACATTCAAATTCCTGGAGGTAGCAGAAGGGCAAAGAGCCTCAGGTGGGAACTCATGTCCAAGAGTGAAGCTGGGTGAAGACCATTTTAGGAACAGGACAGGCAGCAGACCCACATAGAGGCCAGGCTCATGGGTGACAACAGGGCCCCACGTCGCTCAAGTATCCCCTCCTTTGAAGACAGATATGCTGGCTAGAGGCATGGAGACCATGGGGCCTGAGCATACTCATGGTCACTGTCGAGCTGGAGATGGCCCATTCCAGAGATGGCAGCTGGCTCAGCATCTGTGGGCAGGGAGTCAGGAACTTGGTTCTGGGCTCAGCTCAGCCGGGACCCTGGACTCGCTCTGTGATCTTGGGCGAGTCCCCCTCCCACTTCCAGGCCTCGGCTCCCCATGTGCCCAGCATGTAACCTTCACCTTACCTTGTCTTGTTTTCTGACCCCAGCAG
Seq C2 exon
AAGGCCGAGTCCCGAAGTCCCTCCTGCTCACCCGGCCCTGCTCATCCTCTCTCCTCCCGACCCTTCTCCGCCCTCCATGACTTCCACGGCCACATCCTGGCCCGGACAGAGGAGAACATCTTCAGCCACCTGCCTCTGCACTCCCAGCACTTGACCCGTGCCCCATGTCCCTTGATTCCCATCGGTGGGATCCAGATGGTGCAGGCCCGGCCAGGAGCCCACCCCACCCTGCTGCCAGGGCCCACCGCAGCCTGGGTCAGTGGCTTCTCCGGGGGTGGCAGCGACCTGACAGGGGCCCGGGAGGCCCAGGAGCGAGGCCGCTGGAGTCCCACTGAGAGCTCGTCAGCCTCCGTGTCGCCTGTGGCTAAGGTCTCCAAATTCACACTCTCCTCAGAGCTGGAGGGCGGGGACTACCCCAAGGAGAGGGAGAGGACCGGCGGAGGCCCGGGCAGGCCTCCTGACTGGACACCCCATGGGACCGGGGCACCTGCAGAGCCCACACCCACGCACAGCCCCTGCACCCCACCCGACACCTTGCCCCGGCCGCCCCAGGGACGCCGGGCAGCGCAGTCCTGGAGCCCCCGCTTGGAGTCCCCGCGTGCACCGACCAACCCCGAGCCTTCTGCCACCCCGCCGCTGGACCGCAGCAGCTCTGTGGGCTGCCTGGCAGAGGCCTCTGCCCGCTTCCCAGCCCGGACGAGGAACCTCTCCGGGGAACCCAGGACCAGGCAGGACTCCCCCAAGCCCTCAGGAAGTGGGGAGCCCAGGGCACATCCACATCAGCCTGAGGACAGGGTTCCCCCCAACGCTTAGCCTCTCTCCAACTGCTTCAGCATCTGGCTTCCAGTGTCCAGCAACAGACGTTTCCAGCCACTTTCCTCGAATCATCCCACTTCCTCAGCCCCATCTGTCCCTCCGTCCAGGAGCTCTCACGGCCCCATCTGTTGTACCTTCCCATGTATGCAGTTACCTGTGCCTTTTTCTACACCTTTTGTTGCTTAAAAAGAAACAAAACAAATCACATACATACATTTAAAAAAAAAACAACAACCCACGAGGAGTCTGAGGCTGTGAATAGTTTATGGTTTTGGGGAAAGGCTGATGGTGAAGCCTCCTGACCCTCCCCGCTGTGGTTGGCAGCCACCCACCCCAGAGGCTGGCAGAGGGAAAGGGGTACACTGAGGGAGAAAGGAAAAGGAAACTTCAAACAATATAGAATTAAATGTAAAAGGAAGCACTCCTGTGTACAGATGCGATCAAGGTTCCTGTTTATTGCCACTTCACCCCCCTGCCCAGCTCGTAGCCACCCCTCTCTGCCAGCAGAAAGGCCAGTGTCCCCAGGCAGAGGGGCACAAACACAGGCAGGTGACCCCCACCCAGGCCCCAGCAGGCAGGCCCAGAAAAACTAATCTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTGCAAGAAAATAAAATGATACTTTTCCTAGGATTTCAACACAAAATAATAGGTGCAGGTAGAAGGAGGAGGGCTGGCTCCCCAAGGGCTCCTGGATACTCTGGTAGTCTGAGTCATGGGCCCATCCTGGCACTCCACAGGTGGGCAGGCCACCCCACCCACGCACCCCCACTCCAGACACCTCCCTTCTGCACCCCACCCTGGCCCCCTGGGCTGGGGAAGGAGCCCTGACTGTCCGTCCCTGGCTCCCAAGCCCCTGACCGAGGCCTCACTCTCCTGTTGCCTCCTCTGTTCTAAAACCACCAAACCACCCACAAAGGCAGAAGTGGCAGGGCCCGAGCCCTAGCGGCCGTTCCTGAGACTGGGTTTTGGGTTTTGTTTCATCTTGGTCCCTGGGGTACAAGGGAGCCTGTTCCCCTCATGGCTGGGTTTTTCCAGTTCTCCACAGCAGAGGTTTGCGGGGAACTGTTTCAGGACCACTTTGCCACAGGACCGTTTCCCCCCGTCCCTGCCCCTGTCTCCACTACCCCAAGGAAATACCCACAACTGTGGCTGGTGGATACGGCCTGGACCTGTTTGCTGTCTTACACCTCTTTTTTAAAAAGAGAGAGGATGGTGTTTGATACTTCACCCAGCCACCACAGATTCTTTTGACCTAGAGGATTTTTGAATTGTCCTAACTCGTTGGAATTCTCCAAAGCAATCAGTGTGAGCCAGTGCCTCTTCCTTACCCACATCTCTACTTTCAAGAAGCTGCCCTGCATTTCCTGGGGCAAAACTCTACTTTGTAAGAAAAATAATAGGACCAGAAATTTAAATCCCAAATTGAACTATGGAACTTGAACTCTAGCGTGTTCGCCCCAACTGGGAGAGGTGAGCTTTTTCCCAGTGTTTCAGAACTGATTTTCTTTACTTTCTACAAGGGAGGGCAGCACAGGGACTACGGTTGAGGCCCGTGAAGGCTGGGTTTGATGCCACCCTATACAGAGCAGGGACCTCTCTGGCTAATCCCCAGTCCTCAGCCAGGCTGTGTGAATCAAGTGCCTGCCCCAGGGCTCTTGAGCTATTGAAGCTGCTTGGGTACAGGACACAGTAGGTGGGGAGGGTTAAGACCCTTCTGTGAGTTCCCTGTGCGGGGCTGTACTTGCCTCTTCCAATTCGTGGCCTTTCCCTGCTTGGTCCCTACTAGACAGACAAACCAGCCACAGTCCAGCCTGCAGCCAGACCACCTTGTTCACTCATTCTCCTTTGCCTCAGAGCTAAGACAAAAATGAGACAGAAGGCAGGGCTCCCTGGGAGTCCACTGTGCTCCAGGGTTCTGGGGAATCAGGGTTAGCCAGCAGCTCCTGGCTGCTTCCCTCAGAGACTAGGGCTCTCATCCTCCCCAAGAGAAGCAGCAAGCCCAGCCTGGACCACACTGTCCATATTGCTGGACAGTGGCCTGACAGAAAGTGACTCCTCCAAGTCCCAGGAGGCCAGGGCTTTTCTCATCCTTGCCTTTCAGCCCTAACCCATGGGACTGCCCACGGATTGGAGACTTCAAGGGCTGAGGTCTGGGAGCTGCATAAAGGGCATTGCTTCAGCCCAGGTTAGAAATCTGCCTGGGCAAGCTCTTCCTGCCCCAGACCTACAAAGCAGCAGACCGGGGGCTCTGGTGGACTAGCCCCTGACATTGGTGGGGGGCCCCACACCACTCCACCCCACCCTGCCTTCCAGCTCTCCTGGGCATTTTTCTCCCTGTACTCAAACAGCCTACCCACCCAAGGTTTCCTCCCTGGGCAGCCTAGCAATGAACAGTGCAGCCGGCAGGGCAGAGGCCCGGCAGTCACCGGGCCCGTCAGGCTCAGGCAGAGAAGCCACAGGGGCCAGGAGTCACTGGAGACTATTTCTAAATGATGGGGGTAAATGCACAAATAGAATCTCACCAAAGGGCTGCCTCCACATTGATGCCGTGCCCAGAGGGACAGAACCAATGCCACCAGCCTGGGTATATGTCACTGGGCACAGCTCTAACCCCCTCCTCCGGACTCTAGTCCCGCTCCTCTGCGCACAGAGCCCCCAGCCCACAGGTACACCTTCATGATTTGGAGAAAGACGCTCGCCCCATGCACGCCCTCCTCTGGGCCTTCTGCCCTGCTCCCAGTCACTTCCAAGCTTCCTGTTTGCCTGTGATGTTATTGTGCCTGTTGAGGGAAGCAGCAGAGGAGGCAGTGGCTGACTTGGCACAGATGCCTGCTACGTGCTCTGTTGAAATGCGCGGGGTGGCCATTCCTCGGTACAGACTAGTCCTGGTCCTTGGGTGTGGGCAGTGGGGGAGGAACCAACTGGTCGAGGTTTCAGAGCCAAACCTTGCCTTTGGTTGGTGAGTCCTTGCCCCCCAGGCCTGCGCTCCACGATGCCTTTCACCCTTGGCAATCTCAGGGCCATCCTGGGTAGTAACCCCACTCCTCTCTGCTCCCGCCCGCACCTGTGGCTCTCACTCTGGGCTCAACCCCTGCAACCCTCCAGGAGCCCGACAGCAGCCAGCTGCCTGCACTGTCGCCTCCGTAAGCTCCAACTTCCAGACCCAGAAGTCCCTCTGCTTCCCTCTGTTGGAAAAAGCCTAAAAGAATTAGCTTCCAGATTCCTCTAGCCCCTGCTCCATTCCCACCCAGTCCTTCTGAAGAGGAATGAGCAATACATCTGAGCTGGATTTCTCTCTAGTCCTTTCTCCAGACAAATCCTTCTTAAAGCAAAAGTCCTGGCTGAGCACCTGTCCTTGGGGACCGATCTGCCGTGTGACCAGGGGAAGAAAGTTCCCGAAAGCCTGTTCCACCAATTCTGCTTCTGTGTTGTGAATCCAGTCTGCTTTCCATTAGAAAACCGCTTCGGCACTTATGGTCACTTTAATAAATCTAGTATGTAAAAAAAGAAAGAAAGAAAAGAAACAGAAAAAAGAAACGTGCAGGCAAATGTAAAATACAATGCTCTCTGTAAGATAAATATTTGCCTTTTTTTCTAAAAGGTGTACGTATTCTGTATGTGAAATTGTCTGTAGAAAGTTTCTATGTTCTTAAATGGCAATACATTCCAAAAATTGTACTGTAGATATGTACAGCAACCGCACTGGGATGGGGTAGTTTTGCCTGTAATTTTATTTAAACTCCAGTTTCCACACTTGCATCTTGCAATGTTGGTATGGTATATATCAGTGCAAAAGAAAAAACAAAACAGAAACAAACAAAAAAAAAAAACAAAAATCCACGCAGGTCTAAAGCACAGAGTCTGACGTACAAAAGGAAAAATGCTCAGTATTGATGTGTGTGACCTTTGTTGTAAATTACATCTGTACTGTGAATGAGAAGTTTTTACAAGTATAATAATTGCCTTTATTACAGCTCTGGCTGAGTGTTCAGCCTGAGGATATTTTTTAAAAAAAAAAGAATTAGCATGTTGGAATAAATTTGAAAATCCCAACATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127124:ENST00000372584:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.953 A=NA C2=0.896
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATACTCGCCCACCAGGAGAT
R:
GCAGGTGGCTGAAGATGTTCT
Band lengths:
345-1897
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development