GgaINT1014831 @ galGal4
Intron Retention
Gene
ENSGALG00000027365 | HIVEP3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:HGNC Symbol;Acc:HGNC:13561]
Coordinates
chr23:912304-915660:+
Coord C1 exon
chr23:912304-912964
Coord A exon
chr23:912965-915254
Coord C2 exon
chr23:915255-915660
Length
2290 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
GGCCGTTTCTTTTTCCCCATCTG
3' ss Score
-0.16
Exon sequences
Seq C1 exon
ACCAGCTCTGACTTCCACCGAACAATTGGCTTCTGCTGAAAGAGAGTCTGTCACCAGGCCACCCATGTCCCTAGCCATGGAACTGTCAGCCTCAAAAGACACCTCCCCAAGGAAAAGGTGGTCTCCGAGCCAGGACTCCAGCAGAGCTGGCGGCAGCAGCAGACCAATGCTAGCGAGAAAGCATCTGTTAACCAAAAATGAAACTTCACCCAAACGGTTTTCACCCACCGGGGAGATGTCTCCTCTGAGGTGCCTGTCCCCAGGGAGAGGGCTGTCCCCGTGCCCACGTGTCTCTCCCAGGAGGGAGGCATCCCCGCTGCGGTGCGTGTCGCCGAGGCTCGAGCTGTCACCCAGCAGGCATCTGTCCCCCAGGAGAGAGCTGTCCCCCAGAGCGTACCTTCCTCCAGAAGGAGAGGCCTCATCTCCCAGCAGAGAGATGCCATCGGGCAGGTATTTATCGCTGAAGAAAACCTTGCCCCCGAGCTGCTCGGAGGCACCCAGGTACCCATCCCCTGGCAAGGAGGACGCGCCTGGGACAAGCAGATCGGCAGCAGATGACAAAATTCAAAGCTCATATCAAGCCCAGCATGGAATATTATCTTCGATGCCTCTACCTCACAGGTTCTTTGGCAAAAATGTACAGCTCTATGAATCCAAGCTG
Seq A exon
GTAAGTCCAAGCCCCCTCTTTCCCCTTATTATGTGCTGTGTTGTGATTTTAATCAAGCGTTGCAATGCAGAAGTGCAAAGTGACTGTAAACGTATACAGGGAAAAGTGAGAGTGAGCAGCAAAGGGTTTGCATCTGTTGGTCTGCCCATCTCAGCTGAGGGGAAATATAGTTGTCTCCTCTTCAACCCAATGCAGCTCTCCCTGACCCAACCCATTCTTGCTTTTCCTTCTGAGATAAGCAGTAAGGATGTGCGCTTAATAGAACTTGTCAAAGTTTTGCAGAGATCTTTTCCCTGGGAGTTTCAGGCCCATTTCTTAGATTTCACTAGCTAAAGTGAAACTCTACCCATTTTTCTATTGTCAGTGTCCTGAACCAGATTTGGACTAGCCAAGGGTCTCTCACACCTTGATGCTTTCTCCTGGGCTATGTACGCATGCAGCCCACAGTTAGATTAACTGCTGAGGAATGTTGGTTTGGACATCTCTGCTTTTATCTCGCCTCTCCAGCACAGAGAGGTTCTTCCCACTGCATCCAGAATATCATTTAATGTCTCTGTTGGACATATCAAATCCTATGGGTAAAGGAAAATTGCCTGTTCCTCCCACTGCTACAGGCAAATTAGACATTGGGTCTGGTGGAGCGCTGAGAGGTCTCCTATTCCTGCTGAGGTGCCTGGCTCTCCTGTAGTGTGTGCTGATGAACATGAGATCCAGCCCTGGAGGACCCATCACACAGATGCTGACTCAAGCGTTCCCCAGAAAAGCCCCGTTGCACCATTTGCCTTTCTGTCATGTCCACACAGTGAATCATCTCTTGGTGCTGCCTCCCTTCTGTTTCCCTCTATGAGTGTTTGCCTTACTTTCCCGGAGACCATCGATTTTTTTAGGCCCAAATTTTTGTCCACTTGAATTTCCCTCAGTTCTCAACTGCCTTTTGGGGTGAACCTCAGGGCTGTAAAGACCCCATTCCTTCTGTTCTGAAACATCTGTTAGGAAAACTACCCACTGGTGTCCTCTAAGCTCCCTAGTGCCCAAAGGAGGCAGTAGCACCTATTCCTGCTTACCTGCCCACTCCCACTTTTTTACTTACACTAACTTACCTTTCTGCTCATTGTCCTGCTCCTTTCAGAGCTGGGTTCTTCAGATCCCCAAATGGACCCCTGTGCTCCAAACTAGTGTCCTTTGTGGGAATGGTGTTCATCATTTAAAAACATAAAAACGATCTTAGCTGGGGCATAAGGCTTTTGTCCAGATCTGAGCATCAGGTCTCACTGTGGCTGTGCCTCTTCCCAAAGGCTCCTGCAACAGGTCATCTCTCCCCTTGGTAGCTGTTGTACCAGGGGGATTTGCTTGGGGTTTCCCAGCATCCCTACAGCAGTTCTGCCAAAACTTTGTGTGGATAAGTGTCACTGAGCAGGCACTGGGGCTGGTAAATGCTGACTAACTCATTGCTACCTTCTGTGGCTCTTGTTTCCTTTCTTCCTTTCTCTTTTGCTGCCTTCCTCTGCTGCCTTATCACAGAGATTCAGCTTGCAGGTCAGACAGTTTTCCATAGCTCCACAAAGGATTCCTCCAGTGAATCCTCAAATCCCATAACCCCATCTTTACAGAAAATTTATTTCATTTTCTGTAGCTTCCTCTTCCAGGGAGTCCTGTTTAGGGGTTTAGTTATAACCTCATCACTAATTAATCCATTTCTGTTTAGCCACATATCTCTCCATGATGTACATTAGGAAACTATGTGAAGCACCGGTCGGAGAAAAAGGAAAAGGTAAATTGGTAGGGTGCTAGCCTTGATTTCTGCAGACCACACCATGAGGGTGGTGGTGGGGACTGTTGATGGGAGTGCTTTGTGCCAGACCAGAGTTAATGCTCTCAGTGCAAAATATCCTTGCGATTAGCAGCTGTGAGAATGTAACACTGTTTTAAGGATATACATTAAAAATGGATAACAATGGTTTGGGCACTGAAGTAATTCATGTGCTGATGGAATGCAAGGATGCAGGGAGTGTTAATGTCTTCTGGTGGGATTTTGGAGGTGACTGATAATGACCGAACTACTGGGCCTGTGCCTCAACAGGCTGTGTGCCCGCTTGTACACCGAAGGCAAACACTGTGGGTTGTCTTGCTCCTTACCTTAAGGGTTTGGGAGCCCAATCCATCCTGGATTGATAGATCTCTTTCCAAATTAGAATAAAATGCGCGTAGAATCAATCCTTATAATGAGCGTTAATGATGCTAGTGCTGTACCTTATGCATTGCTCTGATCCGGCCGTTTCTTTTTCCCCAT
Seq C2 exon
CTGGTGCAGAAGATAGAACCCAGGAGCCCTCCACGCTCACCCGGCACCATGCAGCCCATCTGCTTCAGACCCTTGCAGGCACCTCACGAACTTCACACCCACAGCCGAGGAGAAGAGAATGTCTTCAGCCACCTTCCACTGCACTCGCAGCAGCTCGCAAGGACCCCGTACCCCATGATTCCCATCGGGGGCATCCAGATGGTCCAGGCCAGGCCAAGCACCCACCCCAGCTCCGTAATGTCCCTGCCAGGGGGACACTTTTCACCTGGTGGCAGTAGCTTTGAGGAGCCATGGGTGCCACGGGAGCCTTCATCTGCATCTGTCTCCCCGGTGGCAAAAGTTTCCAAATACACGCTGTCCCCAGAGCCTACAAGCAGTGAGTGCTTGGAGGAGAAAATGAGGACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027365:ENSGALT00000045163:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.905 A=NA C2=0.978
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]