DreINT0078051 @ danRer10
Intron Retention
Gene
ENSDARG00000037154 | hivep3b
Description
human immunodeficiency virus type I enhancer binding protein 3b [Source:ZFIN;Acc:ZDB-GENE-100922-42]
Coordinates
chr16:34367364-34371759:-
Coord C1 exon
chr16:34371146-34371759
Coord A exon
chr16:34368978-34371145
Coord C2 exon
chr16:34367364-34368977
Length
2168 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
TGTCACATCTCCTCCTACAGGAC
3' ss Score
10.6
Exon sequences
Seq C1 exon
GAGGCAGTGATGAGCGAGTGTGTGAGTCAGAAGACCAGGAGGGCCACCAGTTCTCTGATGTTGACGATTCTGAAGTAGAAGATGATGAAGATGAGGAAGAGGACTTCTCCTCCCATGATGAGCCATCTTCAGCCTGCTCTACTGACACCCGTCAGTCTACAGGTGACCTTTCTGAAAGTGGCCACGGCTCACAGACTGAGCCCTCTGACCCTACAGCAAGGGAGGAATACTCTTCACCTCATAGGCCTTGGCCTGGCATACGAGCCATGTCTCCAGGAGGCAAGAGGGCGTCTTTCTCTCGGAAGGGCTGGGAGGTTTCCCCGAGGAACTTCTCCCCAAGCAGCGAGGGCTCTCCTCTCAGAAGCCTGTCTCCAAGGGTTGAATTGTCCTCACCCAGTCGTCATCTCTCTCCATCTCCAGAGAGAGGCCCGTCACCCATCAGAGCTTTGTCTCCTCTCAGACCTCTCTCTCCTCTGAGACCCGTGTCACCCGCTAGATACAGGAGTGCCAGAGCTCTATCCTCCCCTACGCCTTTAAAGCCTCAGCATCGCCCGCACAGCTCTCCCGCAGGCCTCCACTGGGAGCCCAGCAAACCAGCTACTAACACTCAAAAG
Seq A exon
GTAGGCAATGTAACAATTTAAAGGGGTCTTGTTATGCTGGGTTTTTACGAGATGTTATTTTCCAGAATGCTTCTGTGGAAAAATGCTTGACAGATTATTACTATGCCCTGCTGCTAATGAGACTTTTTGGATAAAAGCAAAAACACTGCAAAAACTAAACATGTAAATGAGCTGCATGTCCCTGCCCAATTACAGCTCATGCTTTTCTCCAGTAGCTAAATGTCAGTAAACTCCTGATATTTGGTTCTGAACGCACAGCCAAATAGTATCAGTATATTAGACCTGTGAAAATGAACCTGAACCACACTGTTCCAGTTACTATGACCAATTATGTGAAGCTGCTTTGACACAATCTACATTGTAAAAGCGCTATACAAATAAAGCTGAATTGAATTGAATTGAATTGAAAATGTCTCTTGGACATGACGACAACCAGGGATGGGCGGTATTTATGATACATGTATTTCAAATACGTATTTTAAATACAAAATAGTCATTGTATTTGATAGGACTTATAAAAATGGCTTAATATTTTCTATCAAAATATCTTAGTATTTTGTAATTTAGTATTTTTAAAAATTTAGTAAAATACTTTGTAAGAATTCTACATCAATACATTGCTTAAATGCATCCTCTGATTGCTGCTTTGGATGTTATTGACTTCCATTTAAAGATGTATTGAAAAACATCTTAGGAGAAAGAGTATACTGTACAAATAATGGTAGTTTTGGATGGATTCCTGATGCCAAATGTTTGTCGTTAAAACAAACAACATAAAAATAAGTCCTACCATGGCGATTCCTACAACGCTTAATTGGCTGTTTTAAATGCCAGTTGTTGATCAGTAGGTCCATTGTATAGTTAATAAAGAGGAAAGATGGAAGCCTTAAGATGTGAAACACAAATATTTATTTATTAAAAACTTCTAATACAGTTTTTACATTGAGTTCTGAAGAGCTAAATAGCAAAAAAGAAAGATTTCAGAAAAACTCTGTGGTAACACTTTATTTTGATGGTCCATTTGAGTATTAGTAGACTGTCTTCTTAATATCTGTTGATACTGACATTTAACAGTCCTTCAACAGACATTTAACTGACTATAAGAAACTTTGCAAGTACATGTAAACTTACACTAACCCCAACCCCAACCTAACAGTCTACTTATAATCTGCTGAAAATGAGTTGGCATGTAGCTGCAATGTAACTTAAACTCAACAAACGGACCATCAAAATAAAGTGTGACCAGTTTGGTTAACAAAAAATGTCAATTTACTCTTTATTTAACACCCTTTTAAAATATTAAGAGGTTGAATAGTCATTTTACAGAGATGATGGCAGTTTTACTGGCCACATTTACTATCAAATATTGTTTGCTTCAATAAGCCAATTTAATGGTGAAGGGATTGATAGATGGAAGATTTGCAAAGAAATGTCATGCTCCTTTGTAAAAGTATTTTGTAGAATTTTTAATATACAAAATACTGTGTTTTATTTTGATACACATTGTGGCTGCTGTATTTATAGTTAATTTTGATTAATCTACAATTAATGTATTTAGTATTTTATTTTAAAATACATTTCAATGTATTTTTTCCCAACCCTGACGACAACACATTACTAATGCAAGTCAAGCAGCTCTAACCACATTTGACAGTAGTTGTTATTAATTCATTTATTCATTTTCTTAGTCCCTTTATTAATCTGGGGTCGCCACAGTGGAATAAACTGGCAACTTATCCCATATATGTATTACGCAGCGAATACCCTTCCTGCTTCAACCCATCACTGGGAAACACAGTAATCATTATAATATACATTAATCAAATAAAGAAATAAAAAACAAAGTTGAAGCATTTGAGGGAGTTTAGCAACAGTGCTTATTGATATAGAGAAGAACTCCTTTTAAAATGGACGTTTCTGTAGCTCCAGATCTTCCTCAATGCACATTTCATGTGGACTAAAGAAAGTTGACAATTAAAACGCAAAATAGGACCTCTTTAAATGTTGGTTTATGTAAATATTTAGTTTCATTTTGCATATTCTTGCACCAAAATGTTATTTTTGTGGATCCCAGAGTAAAACTAAACATGCATATCCAAAGTGATGTTAACTGAGACAAAAGAATATGTACAACAAATTTGTTTCCAATGTCACATCTCCTCCTACAG
Seq C2 exon
GACAAACCTGGTACTCAAGCAGCTCCAGATCCCTGCCTGCTTTCCCCATCCCAGCGCTTTCCTCCCTGCGAGCCTTTCCCTCCAGCTCCAGTGACTCCATGGACAGTGGACCGCATGTTTAGCCACCTTCCTTTGCACTCCCAAGATCAAGCCCGCATGCCCTATCACATGATTCCCATTGGGGGCATCCAAATGGTGCAGCTCCGACCCCCATCACGGCCCAAACTGGAACGACAGTCGTCGTCCACCCCTTCACCCACCTCTCCCAAAGAAGACTCCCCTTTTTCTCTCGCCAGAAGGGATTATCCATGGATCTCATCTTCGGAAAGCAGTCCGCAAAGAACTAAAATCCAAGATGAGGGAGCCAGTCAGTCTGACCGGTTTAGTCCCAGTACAAGCTCGGCCGTACCTAAACTCCTCTCTTTAAAGCAAGGTATAGGGGAGCAACGGACTGCCAAGGTCAGAAAGCAATATAGCGACTCGAGCTCCACCACAAAGACTCGCACTTTTGGTCCCGAAGCATCAAGGAAAACTGCAGCAGACAGCGATGAAGGAGCCCAGAGGATCTCGCAGGGGGAAGAAGCGAGTTCCTCAGGTGAAAGCAGACTGCTACGTGGGACAGAAAAGCCTGTAGCGGCGCCACTCAGGGGACGTGGCTCTTCTGCAGAAGGATCTGACGCTGATCCAGATAGCACTTAAAAACCTCTGTGCACAATGGTGAAATGCTTTCTACTGCTAATACTACTATTGTTTTGTTTTTGTAATGCGCTTATTTTTTATATACACAATTTTCAATACTCTTGGTAACTTGGTAAATGTTTGTTCTGCAATATTCAAGATTGTAATATGATGCACTTTTTTTTTTCTTGGAAAAATATTTCTGTAAATCGATTACGTCTGTCCCTCCTATAATCTTTATTGACATTGCAATCTTAATATATCTATTTGAATATGTATATGTAAAAACAAACCGAAAACCTTGTACTTGTAAAACATTAAGTATGGATATGTTTCTAAATGACCAAGATGAAAACTTCAATTGAGTAATTCCAATATTTCGTCTCTTGTCCAGTATTGCGCAAATTCTAGTGATGTGTGCCTTTTCTGTCCAGATTTACTGCTTGAAGTGTCAAAGATAAAAAGGCTGTGAATTCTTTTCATGAATATAGATTTTTATTTGAGCTGGTGTTTGAAGAAGCGGTAAGGTTTTCTTTGTACGTTAGGGTAAACGAGACAGGCATTGTGCTGTTTAATAGACAAGAGACGAAGGTTTAGGTGATGAGCCTTGCAGGGAAATTGCACTGAAGTCATATTTTTTATAATACATAAGATGAAAATGATTAGATAAGTGTCTCTGTACAGATAGAAAGTCTATGGTCCATATTTATTGCCATGTGAAAATATGAAAATGTTTTGTTTACTTTGGTTTTTCAAAGGGATTTCTATTGTCGTTTTTATTATTATTCTTTACACTTTCTGTTTATAGTTGCGTTTCTTTTTTTAGTTGTGACCTTAAGACTTGAAATGAAGAAACTGGACAGGCTTACAGTGAACTCCAAAATTTGTCACAGACATTTTGCATTTCTGAACCAATAAAGGTACACCAGGAATTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037154:ENSDART00000142223:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.987
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]