BtaINT0072272 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020745 | HIVEP3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:HGNC Symbol;Acc:HGNC:13561]
Coordinates
chr3:105266159-105267195:+
Coord C1 exon
chr3:105266159-105266225
Coord A exon
chr3:105266226-105267159
Coord C2 exon
chr3:105267160-105267195
Length
934 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
AATCTTAACTTGGTTTTTAATTT
3' ss Score
-3.12
Exon sequences
Seq C1 exon
CCCGCCCGCGCCTCTACCTCACAAGCTTCTCGGCAGAAGCCCAGCGGAGACCTGCACCTCCACATGG
Seq A exon
GTGAGTTCCTGTCCCCCAAGTGGCTGATGGGTGGGGGGCCGCGAGCTCACACCTCCCTGAGCGTCACACCCAGAGCTGGACCCCTGCCAGTTCAGCGGTTACCAATAAGGCGTGCATTGGGCACCACTTACACAGGCACTGTGCTGGGTGCCTGAAACCAGTCAGCTGTGTGTCAGAAGCAGCGGAGCATGGACTGTGGAGCTGGACTAAAAGAAAGTGAAAGTGGAAGTGTTAGTTGCACAGTCATGTCCAATTCTATGGACTGTAGCCGGCCAGACTCCTCTGTCCATGGAATTCTTCAGGCAAAAATACTGAAATGGGTTGCCATGCCCTTCTCCAGAGGATCTTCCCATCCCTGGGATCGAATCCAGGTCTTCAGCATCACAGGCAGATTCTTTACCATCTGAGCCACCAGGGACTACCTGATAGTTTTTAAATTCTGGACTACCCAGAATTAAATCCGGGTTCTGTCACTTACGAGCCGTGTGGCTTTAGATGTGGTATAAACACTCATGCCATCTCCTCCCACCCCATTTCCACGTATTCTTTGAGCAGATGGCAGAGCCCAACCCAAATCTCCACATCTCCAACATGACTGCCACCAGCACCCTCCGAGTCACTTGAGCCAGCTCCTTCCCATCTTCCCATCAGCACCGTCACTGTCACATCATCAGTGCCATCTGCCATCAGTACACTCCAGCCACCCCATAGGCTTGATCACCGTGGTCACAACATCACTGCCACCACCACGGTCACGATCCCCAGCACTGACACGTTATCATCATCGGCTTACTTTTCCTCTCCCAACACCTTTTCTGTCACTGGAGTGTCACGACCCAACATCTCTGCTCACCGCCAGCAGTGTCAGCACCATCACTCAAGCGATTCAAGCTCCAGGAGTAGTACCATCCAGGAATCTTAACTTGGTTTTTAA
Seq C2 exon
TTTGGGGCTCAAGTTAAAATTCCTGGTGGTGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020745:ENSBTAT00000027644:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.957 A=NA C2=0.308
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]