HsaALTA0004829-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000100068 | LRP5L
Description
low density lipoprotein receptor-related protein 5-like [Source:HGNC Symbol;Acc:25323]
Coordinates
chr22:25747681-25750779:-
Coord C1 exon
chr22:25750563-25750779
Coord A exon
NA
Coord C2 exon
chr22:25747681-25747781
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
GGTTTGGCTGCCCCATCTAGGGC
3' ss Score
5.3
Exon sequences
Seq C1 exon
GCGATCAGTGTCGATGAGACGAAGAGGCAGACCCTCCTGAAGGACAAGCTCCCACACATTTTCAGGTTCACCCTGCTGGGGGACTTCATCTACTGGACCGCCTGGCAGCACCACAGCATCAAGCGGGTACACAAGGTCAAGGCCAACCGGGACGTCATCATTGACCAGCTGCCCGACCTGATGGGGCTCAAAGCTGTGAACGTGGACAAGGTCGTCG
Seq A exon
NA
Seq C2 exon
GGCCTGGAACTGCTGAGTGACATGAAGACCTGCATCATGCCCAAGGCCTTCTTGGTCTTCACCAGTAGAGCCGCCATCCACAGGATCTCCCTCGAGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100068-10-13,10-12-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.649
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(55.9=26.0)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTGGGGGACTTCATCTA
R:
ATGTCACTCAGCAGTTCCAGG
Band lengths:
169-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)