HsaALTA0004829-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000100068 | LRP5L
Description
low density lipoprotein receptor-related protein 5-like [Source:HGNC Symbol;Acc:25323]
Coordinates
chr22:25747681-25750779:-
Coord C1 exon
chr22:25750563-25750779
Coord A exon
chr22:25747782-25747869
Coord C2 exon
chr22:25747681-25747781
Length
88 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
GCCTGTGTGTTCACTTCCAGGAA
3' ss Score
11.33
Exon sequences
Seq C1 exon
GCGATCAGTGTCGATGAGACGAAGAGGCAGACCCTCCTGAAGGACAAGCTCCCACACATTTTCAGGTTCACCCTGCTGGGGGACTTCATCTACTGGACCGCCTGGCAGCACCACAGCATCAAGCGGGTACACAAGGTCAAGGCCAACCGGGACGTCATCATTGACCAGCTGCCCGACCTGATGGGGCTCAAAGCTGTGAACGTGGACAAGGTCGTCG
Seq A exon
GAACCAACCCTCATGCGGACAGGAATGGGGGTGCAGCCACCTGTGCTTCTTCACGCCCCACACAACCCGGTTTGGCTGCCCCATCTAG
Seq C2 exon
GGCCTGGAACTGCTGAGTGACATGAAGACCTGCATCATGCCCAAGGCCTTCTTGGTCTTCACCAGTAGAGCCGCCATCCACAGGATCTCCCTCGAGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100068-10-13,10-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.649
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(55.9=26.0)
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTGGGGGACTTCATCTA
R:
ATGTCACTCAGCAGTTCCAGG
Band lengths:
169-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)