HsaALTA0004837-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000160959 | LRRC14
Description
leucine rich repeat containing 14 [Source:HGNC Symbol;Acc:HGNC:20419]
Coordinates
chr8:144517992-144519985:+
Coord C1 exon
chr8:144517992-144518041
Coord A exon
chr8:144519615-144519700
Coord C2 exon
chr8:144519701-144519985
Length
86 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
AACTGCTGACTTTGTTTCAGGCA
3' ss Score
6.98
Exon sequences
Seq C1 exon
GGCGGACGGTCTAGGCGGGGCTGGAGGCGGTGGCTGCGGTTGCGGGACCG
Seq A exon
GCACTATGCTGGGCCTTCCTACCACTTGTGTGTGGCTTGGTAGTGGCCTAGGGTCTCTCCTCCCTGCTGAAGTCCCTCTCCTGCAG
Seq C2 exon
GTGGCCGTCTGCCCGGCCCAGCACCATGCACACGCTTGTGTTCTTGAGCACACGGCAGGTGCTGCAGTGCCAGCCAGCTGCCTGCCAGGCCCTGCCCTTGCTGCCACGCGAACTCTTCCCCCTGCTGTTCAAGGTGGCCTTCATGGACAAGAAGACAGTGGTACTGCGCGAGTTGGTACACACGTGGCCCTTCCCGCTGCTCAGTTTCCAGCAGCTGCTACAGGAGTGTGCCCACTGCAGCCGTGCCCTCCTGCAGGAGCGGCCTAGCACTGAGAGCATGCAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160959-0-9,0-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTAGGCGGGGCTGGAG
R:
TGAACAGCAGGGGGAAGAGTT
Band lengths:
173-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development