HsaEX0036498 @ hg38
Exon Skipping
Gene
ENSG00000160959 | LRRC14
Description
leucine rich repeat containing 14 [Source:HGNC Symbol;Acc:HGNC:20419]
Coordinates
chr8:144518005-144520054:+
Coord C1 exon
chr8:144518005-144518041
Coord A exon
chr8:144518749-144518815
Coord C2 exon
chr8:144519615-144520054
Length
67 bp
Sequences
Splice sites
3' ss Seq
CATTTTCTAATCTGTCACAGGGA
3' ss Score
7.96
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GGCGGGGCTGGAGGCGGTGGCTGCGGTTGCGGGACCG
Seq A exon
GGAGATGGCTGCGATTTAGTTTTGAGGATGCTACAGGCAGCAGCAGGGCTGGCACCCTGTGTCACAG
Seq C2 exon
GCACTATGCTGGGCCTTCCTACCACTTGTGTGTGGCTTGGTAGTGGCCTAGGGTCTCTCCTCCCTGCTGAAGTCCCTCTCCTGCAGGTGGCCGTCTGCCCGGCCCAGCACCATGCACACGCTTGTGTTCTTGAGCACACGGCAGGTGCTGCAGTGCCAGCCAGCTGCCTGCCAGGCCCTGCCCTTGCTGCCACGCGAACTCTTCCCCCTGCTGTTCAAGGTGGCCTTCATGGACAAGAAGACAGTGGTACTGCGCGAGTTGGTACACACGTGGCCCTTCCCGCTGCTCAGTTTCCAGCAGCTGCTACAGGAGTGTGCCCACTGCAGCCGTGCCCTCCTGCAGGAGCGGCCTAGCACTGAGAGCATGCAGGCTGTTATCCTGGGGCTGACTGCCCGGCTCCACACCTCAGAGCCTGGGGCCAGCACACAGCCCCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160959-'2-9,'2-3,3-9=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCTTTGGTGTTCTCCCG
R:
ATGAAGGCCACCTTGAACAGC
Band lengths:
171-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development