HsaALTA0004928-2/4 @ hg38
Alternative 3'ss
Gene
ENSG00000177943 | MAMDC4
Description
MAM domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24083]
Coordinates
chr9:136852379-136853209:+
Coord C1 exon
chr9:136852379-136852462
Coord A exon
chr9:136853102-136853141
Coord C2 exon
chr9:136853142-136853209
Length
40 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
GGCTGTCAACCTCCCAGCAGCAG
3' ss Score
3.68
Exon sequences
Seq C1 exon
GCACCCTGTGTGGCCGCACTGCTCCCTCTGGCCCAACCATGCCTCTGTCCAGCCACCTGCTGCCCGCCTTGGTCCTGTTCCTGG
Seq A exon
CAGGGTCCTCAGGCTGGGCCTGGGTCCCCAACCACTGCAG
Seq C2 exon
GAGCCCTGGCCAGGCCGTGTGCAACTTCGTGTGTGACTGCAGGGACTGCTCAGATGAGGCCCAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177943-7-8,7-7,7-6,7-5-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCCCTCTGGCCCAA
R:
CACTGGGCCTCATCTGAGCAG
Band lengths:
132-172
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains