HsaALTA0005183-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000008394 | MGST1
Description
microsomal glutathione S-transferase 1 [Source:HGNC Symbol;Acc:7061]
Coordinates
chr12:16500579-16507204:+
Coord C1 exon
chr12:16500579-16500644
Coord A exon
chr12:16507165-16507171
Coord C2 exon
chr12:16507172-16507204
Length
7 bp
Sequences
Splice sites
5' ss Seq
ACCGTGCGT
5' ss Score
7.22
3' ss Seq
TTTATTTAAATCTTTTTAAGATT
3' ss Score
7.63
Exon sequences
Seq C1 exon
AGTCCCTGCATTGCGCGCGACCCGGCGGCGGGACAGGCTTGCTGCTTCCTCCTCCTCGGCCTCACC
Seq A exon
ATTCCAG
Seq C2 exon
ACCAAAATTGAAAAAATGGTTGACCTCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000008394-1-6,1-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0112413=MAPEG=PU(19.3=61.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)