GgaALTA1019813-3/8 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000013098 | MGST1
Description
microsomal glutathione S-transferase 1 [Source:RefSeq peptide;Acc:NP_001129022]
Coordinates
chr1:63429485-63432301:+
Coord C1 exon
chr1:63429485-63429550
Coord A exon
chr1:63432154-63432236
Coord C2 exon
chr1:63432237-63432301
Length
83 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
AACTTCAGTAGTTTTCAAAGGTC
3' ss Score
-3.85
Exon sequences
Seq C1 exon
AGCGCAGTGTCCGGCCGTGAGGAGCGGGTTGGTCGCGGTGCGCGTTCTCCGAGTGGACCGGGCGAG
Seq A exon
GTCATCAGTGAGAAGCGGAGAAATGGCTAAATCGACCCAGCTAATTGACAATGAAGTCTTCCGTGCTTATGCTACCTATGCAG
Seq C2 exon
CCATTGTTCTTCTAAAAATGATGCTTATGAGCCTTGTAACTGCATACTTCAGAATCACGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013098-2-7,2-6,2-5,2-4,2-3,2-2,2-1,2-0-3/8
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0112413=MAPEG=PU(19.3=61.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAGCGGGTTGGTCG
R:
TCTCGTGATTCTGAAGTATGCAGT
Band lengths:
111-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]