GgaINT1017862 @ galGal4
Intron Retention
Gene
ENSGALG00000013098 | MGST1
Description
microsomal glutathione S-transferase 1 [Source:RefSeq peptide;Acc:NP_001129022]
Coordinates
chr1:63429485-63432301:+
Coord C1 exon
chr1:63429485-63429550
Coord A exon
chr1:63429551-63432141
Coord C2 exon
chr1:63432142-63432301
Length
2591 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
TAATGTCAGTCTAACTTCAGTAG
3' ss Score
-1.53
Exon sequences
Seq C1 exon
AGCGCAGTGTCCGGCCGTGAGGAGCGGGTTGGTCGCGGTGCGCGTTCTCCGAGTGGACCGGGCGAG
Seq A exon
GTGCGTGGGCGCTGCGTGATGGCGGCTCCCGCTGTGGGCTGGAGCGGAGCGGAAGGTCTCTGCGCCCGCCCCGGGGCTGTGCTCCGCGAAAGGCGGCGGGGTTTCCTCGGGCACCGCCTGGGGGGGAGCGCTGGGGGCTGGCGGGGGACGGCGAGGGGGCGGACCGGTGCTTGGAGCTCGCCGCAAGGCCGCGCCATGAGGAGAGGTGGTCGGGCCGGGCCGGGGTCATCCGTGGCTCTCCTCTGGCAGAGTGTTGTCTGACTCTGAATGTCCAGAAGGGCACAGTTTCGCTTTGGCCTACAGCAGCTTAAACGTGCTTTGAGTTCACAGCTCGGATATGATAGGGATGCAGGAGGCCTCGTGACTTCAGCGTGGCTTTGAGCGTTGCCTTTCTGGGTTTTGAAGGCACTTCTGTGGAAAAGTGATTGCAAGTTATGGAAGGAGTGGGTGTGGTGCCAGAGCTTAGGGGTGCAGTGGGGGAGAACGGAGCATATGTTGTGAAGGAGCTGGACTTGCTGTGGCAGTTTGAAAAGCGGTGATACAACAAATGAACAGCAAAAGGCCATCCCGGCTGAACTTCAGCTAATGACAACTACATGGGGAACACACAGCCAGTCAGAACTGGGGCAGAATCACATGTGATGTGAATGCTAGCATAGTTGGGGTTCTAGCGAGGACCTGAATGTAGCTGAAATATCTTTCCCCCCTCTGCTTTGAAGAGCCTGTGCATGGGATCTCGGCTTGTGCATTTAGCAGATCCAGACTTTTGGTCATGCTACAGTGAGGTGTTAGACTTCCAGATGAGGTTGCTGGCAGTTTTAGTAAACGTATCCCTTTACACTTTGTGCAGTTGTGCAGTGTGATTTTTTTATTTTTTTGCTTTTCTGCTGGTGTTAAAACTATGAATTCTTTGACTTCAGTTTTCCACCTTCCATTTTCATAGTGAAAGCAAGGCCAGGGCTTGAGGAAAATTAGAAGATGCTAACCCTACAAGTCATAAAAGTGGACAAGTGTGATATAATTCCGGTGTGAAGGATACTCTCATGAACAGCTTCTCATGACTTTACGTCGTAGTTCTTGAATATATTTTCAGTGTGGCTTTCAAATTCAGTATGGAAAAATGCACAAAGCCACATATTTACTTTCTTCTTTTTTTTTCTCCCGTATGAAGCCATGCATACTCCTTGCTGTGATACAAAGTTAGAAATAAGAGTTTCTGTTCACTGTTGAGTAATATCTTTTTTGAGTTGCTGGTTGTCTTCATTGCTGCTGTACTGCAGTGTGAGTAGAAAGAATGGTGCTCCTTGTTCCATAACCCTGAGTCCTAGTTCTTGGCCCAGTGATCTAGCCACTCTTCTGGAAATGATAAAGGAGGGAGCAAAATTCCACCGTTGCAGCCAGGCATATTCTGGCAAGGCTAGGTTTGTTTCACTGGGCAAGCTGCTGTTTACCTCTGTCCTGCCCTCTTTCCCACCAAGGATCTGTTCTGAACAAGAGTCTTAACACAGCTCTCAGCTGGTCCAGTTTCTCTTTTTTGTTATAGCTGACAGTGACTCCTTGCTGTAGGCAAAATGTGACGTTGTTAGATCTATACATAACATTATTATTTTTTTGTGGCTACTGTTAAAATATAAAAGAAAATAATGAAGTTAATCGTGACAGAAAAAGTACATTTATTTTGGTGTTGAATGAAACACCTGGGAGCTAAGACATACTGGTGTTATGCAGTCCTACTCACTAAATGTGTGATGAATTGGTGAGACTGAAGACTTAATCTGTGCAGATCACAAATTAAATGTTCAAGGGGGCATGCTTTTTATTTTATACACATTTAGTCCTCAAAACTTTAACTTTATGTTGTTGACAAAAGATACCACCTCCATCGGGTCATGAATTTGTTACACCCTCAGTGGAAAGAACCTTCATTAGCTTAAACCTCCCGTGATAAATGCATAAATAGCTCTCTGCTTTTTGTCATTACAACTTAATCTTTGCCTGTGAATCATGCTAAAAACAACTTTTAAGAACTGGATCTCAAAGGACAATATGCATGTTTAACTCAGTTTGATCACAAGTTATTGCTGGGTGGGAAGACAGCGATTAGTTTGAAAACTGAAATGCAGTTATAGTGTTATTTTGCAAAAAAAAGGTAGGCAATACTAATTTTATTCTTTAAACACTATAATATATATATTATGTCATCACACTCTTTATATCCTGATAATTGCTTAGGGAAATTCACTAGTTTAGATGATGGTCTATAACTGGTTGTGTTATTTGAGAAGTATTCTAGTTTGACTAAATTTTGTGTTATACTAGATAGTTTCGTTATTAAAATTGACAGTTTAATAAGCCAATGGAACAGAAAAGAAAAATAAAATGGTAATATAATTTATCATCTTAAGGTATTAGATCATGTCTTTCTGGAAGTAAATTGGAGAAAAATAAACTTGTTTGAAATGACTTTCTTCAGGGAGCCAAAGTTGTGTTGTCATTGCAGTGTAGTGATGCTAAAAAAAACCCCCACCAAATCCATTCTATCAGTCCTGTTGTCAGAACTTTAGGTTGCTCTAATGTCAGTCTAACTTCAG
Seq C2 exon
TAGTTTTCAAAGGTCATCAGTGAGAAGCGGAGAAATGGCTAAATCGACCCAGCTAATTGACAATGAAGTCTTCCGTGCTTATGCTACCTATGCAGCCATTGTTCTTCTAAAAATGATGCTTATGAGCCTTGTAACTGCATACTTCAGAATCACGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013098:ENSGALT00000021384:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0112413=MAPEG=PU(19.3=61.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]