MmuINT0098541 @ mm9
Intron Retention
Gene
ENSMUSG00000008540 | Mgst1
Description
microsomal glutathione S-transferase 1 [Source:MGI Symbol;Acc:MGI:1913850]
Coordinates
chr6:138089058-138096336:+
Coord C1 exon
chr6:138089058-138089127
Coord A exon
chr6:138089128-138096179
Coord C2 exon
chr6:138096180-138096336
Length
7052 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CTCCCTCTTCTTGTCTACAGTCA
3' ss Score
8.78
Exon sequences
Seq C1 exon
CTGTTGGTGAAAAGTCCCAGAAGTGCACAGGCTCGGCAGGACAACTTGCAGCCCTTCTCCCTGGATTCAG
Seq A exon
GTGGGTGCTGCGCACGGCCACGGTGCTGCTCCCAGGCTAGGAGTGGGTGGGTGCAAGGGGCCGGTGGGTGGCAGGTGTAAGGCTAGAGAGTGGCTGTGCCTGTTTGAAAAGCCTTTGTTCCCTTTAGTTGTTTAAATGACCACCCCCCGCCCCCATTTTTGTGGCCCGCTCTAAATGAGAATTGTGCTTTTCTGTTCCTGCATTAAGTTTTCCTTTCTCAAACTCCAAGAAGAAACTTGGGAGCACGAGTCTTTTCATGTTTAAGAGATGGTTTTCTTATTTCTTATTTTCAAGCCCAAGTAGCATTCCCTTTGAAAGGGTCTCTTGATCTTGAGGGGAGGGGAAAAAAAATACATGCAAGTTGTAACAAGATGAGAAGTCACTGCGGTTTCAGCAACTTCTGTCCTTTCCCAGGGAGTAAAACCCTACAGTGTCCCGGGTGACTTGGACATGCAGGCCTTTCAACTTGTTGAAAAGTTGTTTGCTTTTCTAGATTCTCCTGTGGTAGGCAAGAGAAATCTCTACAAGTCTTTACACTGGTACTTTTGATATCATATGACTTACAGACTTAGCAGAGCAGCAGAGCGTGCTCTGTTGTGACTGTAGCCTGATGACCAAAGACCTGAGGGCGCAGCCCTTGGGCAGCTACTCCCCAGAGCCGCCCTCCCCTGTGGCCACTGTAGTCTGGCCCCACTGAGGCTGTAGGGAAGGTGCCTGGGACTCTGATCATGTGTGTATTTCTGTTCTTCCTCTGTTGCAGCCCTCTTTTCTGTCCTCACAACAAATGTGTTTGCTGCTTTCGATCCATTGAAAATTGAAGAGTCATGGCCTTGTGGCTGTGTGCCCAGATTTTCCAAGTTTCACAATACTGATGCAGATAGGGCAAACAGTTTTGAGAAGAAAAGAACTTTGCTTTTTCTTGGCTGAGGGCCCATGAGGAGAAAGAGGAGTATTTCTCAACTGCAGATAGCACTGGGGCAAAATATGACAACAGGAGTTACAGGAGAAGCTTCCAGGAAATGAGAAAACAGCACCCCACAATTCCTAGAATGGAATTGTGAGTCCAGGAACTATACAGGTCGGCGATGACAGGGCTCCAGAGACAGGCAGGTGGGGTCTCCAGTCTCCATTGTACCACCTGGCCTTATTTATACCCTACTCAAGCTTCTTTCCTTCAAAGTAGAAGAAAATGGTTTCTGTGTCGGAGTCTTTCATCCCAAGCTGTTTTCAGTCAACTGGTGGGCATCCCTTTGCTCTCTCCTGACAGGCATCCTGGGTAGGTGAAGAGACCCTTGTGTGATGGTGATTGTCCCGGGAGAGGGAGGGCCTAGGGCTTAGAGGGTGGACTAGCAGGCCAGGCACTGAGCTACAAACACTTTGGAAAACAGAACCCCACTGTTTTAGGATCTTGAGAGAAAGGTTTAGCCATCAGAACCTGAGACTTGACACTTGGCCACTTTTGTTATCCGCAGCTTCCGGCTGCGATGAGGTCATAGCAAACTGTAGGTAGTACCCTCTACTGCTGCATCTTCTACAGGCCTCAAGTTCTGGTCCCCTTAGGGTTGAGGGTAAGAGGCTCATCAGCCTTGGCAGGGTTGATGTTCTAGCTCCTGGGCTTGGAGTAGGGAGTCTAGACATTGAGCAACTCTGGAGTTTCTGAGTTCAGCATCGGAGTTTCTACCTTTGGCTCTTATTGTCTTTCTCACCTCTATTTTACCTCCTTTCTGCCCCAGTTGCCCCTAGCACCCCTCCGCTGTCCTTCCATGGCTTTTGTCCTGCTGCCTTGGGACTCAGTGTTCTTCCTTGGCTTCTCAGGCAGGTCGCTATGCTAGTGATGAACAGCACATGAAGTCAAGAAACTGGATGTGAGGATGTAGGCTTGGAACCCTAGCCCTTGAGAGGCTGGGGTAGGCATGCAGTGAGTTTGAGGCTAATCTGGGCTACATTGTGAGACTCGATCTCAAACGATCACATGTACACACTCAATATATAGACGATAAAAGGTTCTCAAGGGAAGGCTTTTGATGCTGCCATGCCAGGAAGCAGCGTAGAAGGTGCCTCTATGTTGGCTTACAGAGTAATCCAGAGAGAGTAGGTTGGCGCAGATCATAGCAGGCATTCATGAGTGAAGGGAAGGGCTGTGTTCTCACCCACCGTGGCACGGCCCCTCATACACGGGATAAGCTGCATTTGCACCAATCACAGCAGTCCACCACATGCAAAGAGAGAACTGCTCAGCAGCTAAGCTCCCAATTGGACTCCCCTCTCACTTGTGGAAAAGGTTTTGAGGTTTCCAGGATTCGCCCAGCTTGTGATGACTAAACATCTGGTGCAGCCATGGCTGGGACGAGGCCTTCAGGAGCCAGGGATGTGCATTGGAAGCAAGCAGCTGTGGTACTGTGTTGCCTACTTGAGGTGTCCATAAGGTACTCAGATGCTGGCGTGACAGTACTCCATCTGGGTGACTGACTGATGCTCTTGGGCATCAGTCATGTGCTGTGGGCAGCCTGGGAAGGGACTCAGATCACCCTGTCCACCCACACATTTGCTGACACACAAGAAAATAAATATCAGAAGGAGTGCTTACAGTAGGGGCTTACTTAAATTAATAATGATGTTAATAGTCTTTATCAGTGTTTCAATATGCTTAACCCCTTAATATCCCTTAAGGGAGAGGGGGGCCACTCACTTGTCTTACAGGGAGGTCTGGTATAACAAGCCTTTTGCAAACCTTTATCTGATTAGAACACTGCTACAGCAGGAGCACCTTTATCCAGCACTCACCCGGCACTAGCGATTATTAAAGTCCTTCATAGTCACTTAGTGCATAAAAAACAATATCCTCTGAGGTAGGACTGTCCAGTATCATTTTTTAGCGTGTGGTGGTATATACTGTAAGCTGAACTTCAGAGGTTGAGGCAGGAGGGTCAGGAGTACAGGGCCAGCAGGGGCTACATGCTGCATAGGAAAACTTGTTTTACAGGTATGGTAGCTCAGTTAATTTGTAAGTGGTCTGTTGAAATCTGCCTGGACTCCAGGCTGCTTCTAGAGTCTGTGTGAACTCTGTTCTTTCAGGGCACAGCCAACTCCACACCAAGGGAGTGGGCGAGATGCCAGTCGAGATAAGGATCCTGGAAGGGATAGATGATTACAGGAAAATCCATCCTTGTAAATATGTGTCCCATGTAACTTATGGTCAAATACCCTGTATTCCCAATTTTTCTCCTCCTCCTCCTTTTTCCTCTTCCTTTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCTCCCCCCGCCCATCTTCCTACCTACTTATCTACCTATCTTGGACACGTCCCTAACAGCAAGCTTTCAGTGAGTTTGTTTTTTTCATTACACAGCCTTGCCGTTGCCGTTATTCTGGTTTCAATTAGGCGTAGCAGGCTCACGGCAAGGAGAAAAGATCCAGAACGGTATTCCCTGCCTTTATGTGGTCAGGTCTGCCTATTTCTCCGTGGTCTTATCCTTACTCCCCATGATATGGTTCCCCTATACCTGGGAAGTGGAAGATTTCTGAGAGAGGAGGCTCATGGGCCCGTGGTGTAGACAGAATAGGGACTTGGTGCTGGCTGGTCTCCCAGAGTCACAGGCCTGAGAAGTTAGTCCCCATCCCTGGAAACCAAGTAACCCCACAGTATCAGCTTCAGGAGTAAGGTTTGCAGATGCAGAAACCCCTCATTGCCTTTTCTTTCCAAACGCTGACACCTCTGCATTTCACCACTGACTGTTCTGGAAGGTTCCTGATTTTTCTCTCCTTCTCTACCACTGATTTCCATCATGCTGAATGAAACCCCCCACCCCCACCCCCACCCCAACCTTGCTGGACTTTCTGTTCCAGCACTAATAAAGTTTTGTTCTGGAAATAATCACAGAGGCTTTTATTATGAAGGTTATTAAATAGCAGAATTTTCTACTTCATAAACTTTGTGAGTTTTTTCTTTTCTTTTTTTTTAAAAATTAAAGTCCTTGTTGTATTTCTTCAGATCTCTGTTCAGAGGCAAGGACCATAGGGATTCTTTATTAAGCTAATTAACTTTACAAGAGCTCTGAAGGATAGGGCATTTTACCATGACTTTTATTCCCCCAATACCAGAGCAATAGCAGATATATTAAAAACTACTGAAAGTATTATCTTGCACTGAGATAACACACTGTGCTTTCAAGAGCATGAACTCATAGAAATGGATCAACTCACTGTCATAAGTGGAATTTAAAAATAATCTAGGGCACGGTAAACCCTTTATTTCATGAATTTCATCCAAGTGTAGATAAAAACATAAAAAATTGCATCTGTGTTGAACATTTATACAGAAGGTTTTCCCCTCACTAATTTCTAAATAGTTCGGTGTAGCTACTTGTGTGGTGTGTACGTGTCATCAGGTATGACCAATGATGACCAGATGTATCTTAATGGTGCCCTGTTGCTGCAATGAAACACTCAGACCAAAAACTGATTGTGAAGAAAAGGGTTTGTTTAGTTTACATTCTAGGATCACAATCTATAACTGAGGCATGTCAGAGTGGGAGCTGAAGTAGAACCCACAAAGGCATGCCTCTCTCTTTGTCTCTGTCTCTGACTGTCTCTCTCTTTCCCTGTCTCTCTGTCTCTCTCTGTCTCTGTCTCTCTCATTTTTTTTTATTCAGCCCAGACCTACCTGCTTAAGGACAGTGCTGCCTATAGTGCACTGGGCTGGCCCACACCAATGAACAGTTCCTCATAGACATGGCCACAGGCCAGTCTGATTGTGGCAGTCTTTCAATTGAGGCTCCCTCTTCCCGGTGAATTTAGGTTTTGTCAAGTCGGCAATAAAAGCATGGGAAGCTAAATGGGAGGCGTGCTTAGCCAGTACCATAGAAGAGACTTGAGCATCTGCGGGAGGTGTATCCAGAGGAAGCTCCTGAAGACGCAGGACCCCAGCGTGACTGTGGTTTCACTTAGACTACATGCAAGGGGCACAGTTTTATCTTAAGGAGACCATATTCAGAGTTTTCTTAGGAGGCTTCGGGTTTCATTATCATTAGAACAGTCAAGCACGGAGCATGTGGTCTCTCTAGGAAGGAGAGAGAATGTAAGGGGTGGGAGGGGTGTCCATTAGGTCAGCCACAAGTAGGCATCCAATTTTTAGTTCAATAAGGACGAAAACAGAGTTGAGACATAGAAAGGCAAATGGAGCAAGTCTTCTCAAAACATCAGCACAATGTATAATTAGCATGCAGGATGAGATATTAGCAACCCCGGGCTTGTGTCTCAGCTCCCATATTCTGTTTCTATGAAGTAGATAGCAATTTTTATATTCATAAACATTATGTAGAGTTTTTACAGTAAAGTCCAAGGTATTGCTGGACACAACAAACTCTCACAAACTTTAATGTTTGTGGTGATGGGTTATATCATATTGCCCAACAACACATAGACAACTGCCTGCCCAGCAGCAAATGGAAGATAGATGTATCTTGTAGACTCTCGGTAAATGAAGAAAGTTTCTGGAGGCTGACCTATAAGGCTACAGGAAGGAATTTAAAACAGGAATGGACGTCATGAAGATTAGAGCTGCTTAAGGAGTGTGAGAGAAGATGCATGCTTTAGGGAATGGATAAAGGCAGGGATCAGGGGTCAGAGGGTGCTGGAGAAGGTGAAGGTCTCTGATATTAAGCCTTAGCCTAAATCCCCATTAGTTTTGATTTACTGTGTCTTTTCTCCTGAGTGCACTATACCTTTACCTCCTGGCTCCTTCTGTTTACCATTTACTTTACTTAGATGTTTGTTCGCGCACTTGTTCATTTTGTTTGTTTGTTTGTTTGCTTGTTTAGTCTGTGCCTGTGCTTGCACACACTTCCTGATGTGTATGAATGTGTTGGACAACTTTCAGGAGATAATTCTCTCCTTCTACCACATGGCTTCCAGGATTGGACTCAGGTTGTCAGGCTCAGGCTCAGCAGCAAGCACCCTTGCATATTGAGCCATCTCTTCAGCCCCCCAGTTTCCTCCTGACAGCTTTTACATGGATGTGACACGAACCTATCTGTCCTGCAAAGCTGGTCCTCTTCCCCTGGGCTCCTCTTTCCCCATGTACAGTTTCCTCACTGTGGGCTCATGGGTCTGGTCCTGGGACGTTCCCACTGTCCTTTCTTCCTTCACCTAGACTGCTGTTACCGTGACGATGATGGTATCGTGAACTTTATCGAGCCAGGTTTTGTTGTATAAGCTTGTAGATTCAGTACTGGGGAGGCAGAGTGTTCATAGTTATTCTCAGTATATAGCAAGTTAGAGGCTAGCCTATGATAGTTGAAGACCATGCTGTCAAATGAACAAATAAATAAAGAATAAAGTAAAAAAGTATGGATGGTCCCCCTGCCATTGTTGGCTACTATTATATTCATTTTCATTTTTTGCATTTAAATATGATAGTAAATTAGTGATAGATACTAATAATGTTTCTAGGTTTCTAAAGAAGAGCATTCAGATTTTAAACATTCCCAGTGACACAGCAGTCCTGCTGTGGGTGGAGCTTCGTACTTCCAAAGATCCTGCAGTGACCACTGAGCTATTGATTAAACCTTTGTTCTTCCGGGTACAAATCTGCATTTTATTCTATCTTTGGGGCATTTTGACTGTTTTTATGCTCTGCTCCAATAACTCTTACACTTCCTTTTAGCACTTGCTTGGTATCTTCATCTTTCCTTTAGAGGAATTATTATTCTGTTTATTCCAGAACTAATTCTGCTGTTATTTAATGAATTAAATTATTTGAAACAAGATTTCACCCTGTAATGTGGGCTGACCTGAAACTTACTGTGTAGCCGAGGGTGGTCTTGAACTCCCAACAGTTGTGATTACAGGAGTGAACCTTGTGCGAGGATGCAATCAGTTCCCTTGTAAACAGCCCATGATGTACATGTGTTTCAAGGACAATGAAGTTAGTGCTGTGATGTCAGGTTGCCAAGTGACCACCAAGTTACCTGGGCTGTTCCCATCTCCCTCTTCTTGTCTACAG
Seq C2 exon
TCATTTGAAGACTGAGACCAAGATTGGAAGCATGGCCGACCTCAGGCAGCTCATGGACAATGAGGTGTTGATGGCCTTTACCTCCTATGCAACGATCATTCTTACCAAGATGATGTTCATGAGCTCTGCGACCGCATTCCAGAGGATAACCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008540-Mgst1:NM_019946:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.016
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0112413=MAPEG=PU(19.3=61.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: