RnoINT0092201 @ rn6
Intron Retention
Gene
ENSRNOG00000007743 | Mgst1
Description
microsomal glutathione S-transferase 1 [Source:RGD Symbol;Acc:70927]
Coordinates
chr4:172119331-172125767:+
Coord C1 exon
chr4:172119331-172119421
Coord A exon
chr4:172119422-172125610
Coord C2 exon
chr4:172125611-172125767
Length
6189 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CTCCCCCTTCTTGCCTACAGTCA
3' ss Score
8.69
Exon sequences
Seq C1 exon
GGGTGGTGCCAGCGCGGGTCCTCTTGGTGAAAAGTCCCAGAGGTGGGCAGGCTCCGCAGGACAGCTAGCAGCGCTTCCTCCTGGGATTCAG
Seq A exon
GTGGGTGCAAGACAAGGGGTTCTGCATGGCCACGGTGCTGCTCCCAGTCTAGGAGTGGGTGTTGGGTGCAAGGGGCCAGTGGGTGGCAGGTGTAAGGCTAGAGAGTGACTGTGTCTGTCTGAAAAGCCTTTGTTCCCTTTAGCTGTTTAAATGTCCTCCCCCGCACCGCCCCATTTTTGTGGCCTGCTCTAAAAGAGAATTATGCCTTTCTGTTCTGGCATTAAATTTTTTCTTTCTGCAACTCTGAGAAGAAACTTGGGAGCACGTGTCTTTTCATGTTTAAGAGATGGTTTTCTTATTTTCAAGCCCAAAGTAGCATTCCCTTTGAAAGGGTCTCTTGATCTTGAGGGGAGGAAAAAAAAACGCATGCAAGTTGTATCAAGATGAGAAGCCACTGAGGTTTCAGCAACTTCTGTCCATTCCTAGGGGGATAAAACCCTACAGTGTCCCTGGTGACTCGGACATGCAGGCCTTTCAGCTTGTTGAAAGGCTGTTTGCTTTTCTAGATTCTCCTTTGGTAGGCAAGAGAAATCTCTAGAAGCCTTTAAAATAATACTTTTGATGTCACAGGACTTAAAGATTGAGGAGTGCATGCTTCGGTGTGACTGTAGTCAGTTAACCAAAAGTGCTGATGGTGCAACCCTTGGGAGGCTGCTTCCGGGAGCCGCCCTCCCCTGTGTCCGCCATAATCTGGCTGCAGCGAGAATCTGTGCCTGGGAATCTGATCATGCATATATTTCTTTTTTTCCCCCCTCTGTTGCATCCTTCTTTTCTGTGATCACAATAAATGTGTTTGCTGTTTTCAGTCGGTTCAAAATTGAAGAGTCATGGCCTTGTGGCTTCGTGCCCAGACTCTCGGTGTTTCACAATAGTGTGCAGAGAGGGCACATGGTTTTGAGAAGAAAAGAACTTTGCTTTTCTTGGCCGAGGGCCCATGAGGAGAAAGAGGAGTGTTTCTCAACTGGAGATAGCACTAGGGGAAAAAATAAGGCAACGGGAGTTACGGGAGGAGCTTCCAGGAGATAACAGCGCTGGACAATTCCTGGCATGGAGAGTAGAGAGTTCAGGAATCACAGGTTGAGGACAGGACTCCAGCCTGGTGGGCTCTCCAGTCTCTACTGTGCTTCCTGGGCTTATTCAGACCCTACCCACGCTTCTTTTCTTAAAGTAGAGGGACATCAGTTCTGTGGTGGAGTCTTTCATCCCAAGCTGGCTCCAGTCAACTGGCAGGCATCCCTTTGCTCTCTCCTGACAGCCATCCTGGGTCGATGAAGAGAACCCTGTGTGGCAGTGGCAGTCCTGGGAGAGGACCTAGGGCTTAGAGGGTAGACTAGCAGGCCAGGCAACCCGTAGCTACAAACACTTTGGAAAGCAGAGCCCCACTGTTTTAGGCTCTCGGTGAAAGGTTTAGCCATCAGCATCATGAGACTTGACACTTGTCAGCTTTTGCTGTCTTCAGCTTCTGGCAGAGGTCAGGGAAAGGCAAACTGAGCAAGCGGCAGTTGGGAGTACCGTCTACTGCTGCGTCTTCTGCAGTCTCGAGTTCTGGTCCTCTTAGCCCCACAGCAACAGTGGACAGCTCTAGGGTTGATGACGGTGTCTTCCTCAGCGTTGACAAGGGTTAGTGTTCTAGCCTCTGGCCTTGGACTTGGGAGTCTGGACAGCGGCTCCTGCAAGTGTTTCTGAGTTCAGCGTCTGGAGTTTCTGCCTTTGGTTCTTGCTGTCTTTGTCATGCCTACTCCACATTGGTTCTGCCCCAGTGGCCACAGCTATTGTCCTGCTGCCTTGGGACTCAGTGGTCTCCCTTGGCTTACCAGGCAGGCCGCTGTGCTAATGGTGAACAGCTCACACAGTCAAGAAACCAGGTGTGAAAATGGAGGCTTGTAACCCCAGCACTTGGGAGGCCGCTGTAGGAGTGTAGTGAGTTTGAGGCTAATCCGGCCTCCATCTTAAGACTCCATCTCAAAAGACCACACGCACAATACAGACAATAAAAGGTTATTCAAGAGAAGGCTTTTGATGCTGTCATACCAGGAACCAACACAGAAGGTGCCTCTATATTGGCTTACAAAGTAGTCCAGGAAAGGAATGTTGGCACAGATCACAGCGGGCATTCTTAAATGAAGGGCAGGGCTGTGTTCCCACCCATTGTGGAATAGTCCCCCGTGCAAATGAGAAGCTCCGTTTGCCCCAATCGCAGCAGTCCACGTGCAAAGATAAGACTGTGTTCACCAGCCAGGCTCCCGTTGGGCTCCCCTCTCATCTGCGAAGGTTTTGAGGTTTCCAGAATTCACCCGGCTTGTGGTGACTAAGCATGGCTGGGACAAGGCCTTCCGGAGCCAGAGATGTGCGTTGGTAGCAAGCAGCTGTGGTGCTGTGTTGCTTACTTGATGTGTCCTCAAGTAAAGTCCTCAGATGCAGGTCCTGGGTGACTGACTGATGGTCTTGTGACGCAGGCAACCTGGGAGGTCTACAGCTGCCAGTAGGAATTCAAATCACCCTATCCACCAACACGTTTGCTCACATATGAGAAAATAAATAACAGTGGGGACTTACTAAAGTTAATACTGATGTTAACAGTGTTTATCAGGGTTTCAATATGGTTAACAGCTTAATAGCACTCAAGGGAGAGGTGTGTCCCTCACCTGTCTGACAGGGAGGTCTGGTATAACAAGCCTTTTGAAAATCCTTCTATGATGTCCTTACTGATTAAAACTCTGCCACGGTGAGAGCATCTTTATCAAGAACTCGCCTGGCACCAGTGGTTATTAAAGTGCCTCACAGTCACTTAATGCACACAGAACAATCTTCTGAGGTAGGATTCTCCAGTATCATTGTTTAGGGTGTGGTGGTGCACGCCTGTAATCTAAACTTCAGAGGTTGCGGCAGGATGATCAGGAGGTCAGGGCCAGCAGGGGCTACATTGGAAAACTTGTTTTACAGGTACGGTAGTTCAGTTAGTTTCTGCCTGGTTGGTGGTCTGTTGAAATCTGCTGGAACCCCAGGCTACTTCCAGAATCTGTGTGAACTCAGTATCCCTGTGTTCTTTCAGGGCATAGCCAACTTCACACCGTGGGACTGGGCGTGCTGCCAGTCAGGATCAGGATAGCGGAAGGGATGGGTGATTACAGGAAAATTCATCCTTGTAATTATGTTTCATTTAATTTATGATCAAAGACCTTGATCCCTCGATTTACTAATCTGTCTGTCTATCTATCTATCTATCTACCTACCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTACCGACCTACCTACCTTCCACCTCCTGGACCCTTCCCTAGCAGCAAGCTTTCAGTGAGTTTTTCCTCCACAGAGCCTTGGCATTATTCCAGTTTTGATTAGGTGTACCAGGCTCACGACAAAGAGAAAAGATCCAGAATTATATTGCTTTCCCTTATGTTGTCAATGCTGCCTATTTCTCAGTGTCCTTACCATTACTCCCCACGATATGCTTCCCCTATATGTGGGAAGTGGGAAATGTCTGAGAGAGGAGACTCACAGGCCCATGGCATAGACATGGCCTAGACTTGGTGCTGACTGGTCTCCCAGACTCACAGGCCTGAGGAGTTAGCCTTCATCCCAAGCAACCCCACCGTGTCAGCTTCACGTGTATGGTTTGCAGATGCAGAAACCCCTCATTGCCCTTTCGTTCCGACTGCTGATACTCCTGCATCTTCCCACCAGAAGGTGGAAGGTTCCTGATTTTTCTCTCCTCCGACACTGATTTCCATCAATGAAAAATCAATCAATCAATCAATCAATCAATCATTCAAACAAACAAACAAACACACAAAAAGCTAAAACCTTTCTGAACTTCTTGTTCCAGTGTCTAATAAGCTTTGTTCTGGGGAAAAAAAAATCACAGAGGCTTTTATTTTGAAGGTATTAAAAAGTAGAATTTTCTACTTGATAAACTTCCTGAGCTTTTTTTTTTTCTTTTTAGAAAAATTAAAGTCCTTGTTGTATTTCTTCAGATCTATGTTCAGAGGCAAGGACCATAGGGATTCTTTATTAAGCTAATTAACTTTACAAGAGCTCTGAAGGATAGGGCATTTTACCATGACTTTTATTCCCCCAATACCAGAGCAATAGCAGATATATTAAAAAATACGGAAAGTATTATCTTGCACCGAGATAACACGCTATGCTTTCAAGAGCATGAACTCGTAGACGTGGATCGATCAACTCTCTGTCATACGTGGAATTTAAAAATAATCTAGGGCACAGTGAACCCTTTATTTCGTGAATTTCATCCAAGTGTAGATAAAAAAAAATGCATCTGGGTTGAAGCTGTACAGAAGGTTTTCTCCTCACTGATTTCTAATCAGCTCTCCATAGCAATTTGTGTGGCTTGTAGGTGGTATCCAGTATTACAAATGGTGACAGATGTGTCCTGGTGTCATTTCACACCAAAAACTAATTGGGAAGGAAGGGGTTTGTTTAGCTTACATTTTTGGATCACAATTTGTAACTGAGGGATGTCAGGGTGGGGACTGAAATAGGAGTTGTAAAGGCACTCCTCTCTCTGTGTGTCTCTTCATCTCTGTGCCTGTCTCTCTGTCTCTCTGTGTCTCTGTCTCTGCATCTCTCTGCCACTTGGTCTCCCTTTCTCTCAGCTTTCTTGTTCAGCCCTGACCTACCTGCTTAAGGATGGTGCTGCCTATAGTGGACTGGGCTCTCCCACTCATCAATGAACACTTCCTCACACACACACAGGCCAATCTGGTTGTGGCAATCTCTCAGCTGAAGTTCCCACTTCCCAGTGAATTTAGGTTTTGTCAAGTCCACAATAAAGACTATTGGAAGTTATATGGGAGGTGTGCTTAGGCTATATCATAGAAGAGACTTGAACATCTGTGGGATGTGGTATTCCCAGGAAGCTCCTAAAAGCACAGGACCCCCTGGGATGACCATGTAGTATTCACTAGACTACATGCAAAAAGCACACTTTTTTGAAGGAGACAATATTCAGAGTTTTTTTAAGGGACCTTCAATTTCCTTATCATTAGAATAGGCCAGGCCCCAGCGCATGGTATAAGTGGAAGAAGGGAGAATGTAAGGGGTAGGAGGTATGTCCGTTAGGTCAGCCACAAGTAGACATCCAGTTTTTAGTTGAATGAGGACTAAACAGAGTTTAGACGTCGAAAGGCAAACAGAGCAAATCTCCTCAAAGAATCAGCACAAGGTGTTATTAACATGCAGGGAGAGACATTAGAGACTTGGTTTGTGTCTCCATTCCCATATTTTGTCTCTACGGAGTAAAGGACAATATTATGTTTATAAATATTATGTAGGGTTTTACAGTAAAGTCCAAGGTATTGCTGGACACAACAAACTCTTACAAAATTAAATGTTTGTGGAGATGGGTTTTATCATATTGCCCAACAGCACACAGACAACTGTCTGTCTGGGAGCAAATGGGAGATAGATGTACCCTGTGGACTGTGGGTAAATGGAGGAAGTTTCTGGAGGCTAAGCTAAAAGGCTACAGGAAGGAATTTAAAACAGGAATGGACATCGTGGGGAAGCCAAGAGGATTAGATGCTGCTTAAGAAGGATGTGTGAGAAGATGCATGCTTTGGGGAATGGATAAAGGCAGGGGTCAGGGGTCAGAGGGCACTGAAGAAGGTGAGGAGTTCCGATGTTAAGCCTTAGCCTAAATTCCCATCAGTTTTGACTTACCGCATGCTTTCTTCTGAGCACAGTATAGCTTTACCTCCTTCTGTTTACCATTTACTTTACTTGTGTGTTTGCTTGCTTGTTTGTTCACCGTTTGTTTAGTGTGTCTGTGTCTGTGCTTGCTCATACTTCCTGGTGTGTATGAATGTGTTGGATAACCATCAGGACGTGATTCTCTCCTTCCACCATATGGGTTCTAGGGATTGAACTTGTGTTGTCAGGTTCAGCAGCGAGCACCCTTGCATATTGAGCCATCTCCCCAGCCCCCCAGTTTCCTCTTGACAGCTTCGATGGATGTGAAGTCAGAATGTGGCACCATCCTCTCTGTCCTGCCAGGCTGGTCCCCTGTCCCTGGCTCCTCTTTCCACATGTACCTTCTCCTCACTGTGGGCTCATGGGTCTGGTCCTGGGGCATTTCCAAGTGATCACCAAGTTACCTGGGGTGTTCCTGTCTCCCCCTTCTTGCCTACAG
Seq C2 exon
TCATTTAAAGATTGAGACCAAGATTGAAAGCATGGCTGACCTCAAGCAGCTCATGGACAACGAGGTGTTGATGGCCTTTACCTCCTATGCAACGATCATTCTTGCCAAGATGATGTTCCTGAGCTCCGCGACTGCATTCCAGAGGCTAACCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007743:ENSRNOT00000010579:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0112413=MAPEG=PU(19.3=61.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]