BtaINT0093003 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008541 | MGST1
Description
microsomal glutathione S-transferase 1 [Source:HGNC Symbol;Acc:HGNC:7061]
Coordinates
chr5:93942055-93950162:-
Coord C1 exon
chr5:93950047-93950162
Coord A exon
chr5:93942196-93950046
Coord C2 exon
chr5:93942055-93942195
Length
7851 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
AAATCTTTTTAACATTCCAGACC
3' ss Score
5.92
Exon sequences
Seq C1 exon
GTGTCCCGCCAGCCCCGCGCAGTGAAAAGTCCCACAGCTCCCGCGCGACGCGCTTCTGGGACCGGCTCGTGGTCTTTCTCCTGCTCAGATTCACAGCACCTGCTCGGGAGTGGTGT
Seq A exon
GTAAGTAGAGGGTGAGAAGAGAGAGGGTGGCGCCGGGAAGGGGGCCGGGGTGGCAGGTGCAGGCTTGGGGTATCTCTGCCGACCTGAAACTTGTTTGCACAGAGTAACTGCTAAAAGTTTGCTTTTCAATCCACTACTTTTAAAAGGGAGTTTCGTTCCTTTACCCCCCAACCCCGTAGATAAACTGTCAAACTCCAGGATTAAAACTTGAGAGAATAATTCTTTTTGTGTTTAAGTGATGATTTACCTACTTTGAATTCTCAAGCCAAGGGAGCATCCACTTGGAAAGGGCGCCAGTTGAGCTTTGGGGGAGTAAAACGTGAGCTCATGTAACAACAATCGAGGAATGGCTGCAGTTTAAGAAACTTCTGTTCATCCTAAGGGGGTAAAATCCTGCAGAACTTCTGAGATCCAGGACAAACTGGCCTTTGCATCGCCTGAAAGATAGAACTTGCTTTTCTTGGTTCACTTTGACAGGCCAGAGAAACATCAGCAAGGTAAAAATAATAGTAATAATGAACAAAGTGCAGCATGACCTGAATCAGATCCTATTAGATGAATTAGATACCACAGAGTCAGACATGACTGAAGCAACTTGGCAGCAGCAGCAGCAGCAGTCAGTTGACTGGAAAGCTAAGGATCAAACCCCTTGGGAAGGTTCTCAACTGTGGGGGTGGGTGGGGGGAGCCCAGTCTGGAGGTGGAAGCCATGTGGAAGGAGTAGAGGAGAGAGGAGCCCTTCCCTGGGAGTTAAGGCCTCATCTGTGACTGCCATTGCTGCACTTGGGCGGTGGGGGCCAGGGTGCCTGCAGATTCTATCTCCCTGCTGCGGCGTTCTTTGAAATAGTCACAAGCCCTTTTGGTAGTCCTGACACCACTTTTTATTTTCTCCTTTTCCCTCTGCTGTTTACTCTCTAAGAAAGTGCCAAGTGGGCTGTCATCAAACATTATTGAATAGCCTTTGGAAACTTGTCCAGACCCCCAGCTAACAGGCTTTAAACCAGGCCAGCCCAGTGTTCTCAGAGCCCTAGCCTGCTGTGAATACCAAAGAAGACACACCTTTTGAGTTCTTGGGGAATTAGGCTGGTATTGAGTTTTGCTGTCTTCTGAAGTTTCCAAAGTAAGAGGCCTGTGTGTGTGTGTGTGTTGACCATCTTTGAAAAATAGCAAATCAGTCCAAATTTGCATATTACTTTCTGTGGCAGGGGCGGTTTTTCTGAGGGTTTGAGAGTGGAGTTTCTTTGATGCTGAGACTAGAAAAGGAGGTCAGCATAGTTTCCTGAGCATAGTCCCCCTCCCCCCACAGCCCAGCAGCATTCCCCGCACCCTGACCCCGAACACCTGGGCCCTGAAGCATAGGGGGCCATGTCTGCAGTCACTCAGTCTTTTCCATAAATTCTACAACTCACAAACAGCAAGGAGACCACTGAACTGTCTTTTCTCTTTATCTCACGGGCAGTGTTCTGTTGCTTTAAGAAGGTCTGAAATCGCAGAGTCCTGACCATGGGAATGTGTGCTCACATTTTCTATGTGTTGCACAATATTGATGGAGAAAGGCCGCCATAAATAAGAGAACTTTGCTCTTTTTGGCCAAGAGTCTATAAAGAGAAGCGGGCTATTTCTCAGTTAATAGTATCTGTCACTAAACTGTGATAGACAATAAGGGGTGGGGGTGGGATTCTAGGGGGAGAGTGAGGGGGATAAAACAGGAAGGGGATTTGACAGAAAGAATTCCCCAGAAGACCAGGGTAGTCCAGAATTCTCCTTGATGGGGGATAGCCTACAGGTCCAATATTAGAGAAAACTGGGTTCCAGTCTTGGGCCCTCCACTGTGAATTTGGGTCAGATTACTAATTCTACCTCTCTGGGTCTCAGTTTCGTTATATGTTCAAGGTAGAGATGAATATTTGCTCTGACTACTTGAATTTCTCCAAGTTCTCAAGAGAGATAATGCTATGGCCTTTGAAAACTCTGAAATTGTATCCTCAATGCTTAGAACAGTGCCAAGGTAAGGGCTTATTTATTCACCAAATACTTACCTAGCACTTACCAGATCCCTCTGCCTTTCTTTTTTCATTTTTTTATTTCAAACTTTTTATTTTGTACCGAGGCATAGCCAATTAACAATGCTGTGACAGTTCCAGGCAAACAGGGAAGGGACCCAGCCACTCATAGGCACACATCCACTCTTTCCCAGACTCCCCACTTTATGCTCTATTCACTTAATCCTCCCAAGAGTTTTGTGAGGTAGGAGGTTTTATTAACCTCATGTTGCAGGGAAGATTCATTAATCACAGCTGGTAAATGACAGAATTGGATCCACTACATCTAGTTCTGGAGCCTGTCTTTGTCCTTTGTAAAGGCACCCCCTCCACATTAGGTGACTGAGTCCCCTTTTCTGGTGAGATGGGTACATATATTCTCTATTATGCCAACCAATGAAAGGGACAACACACTGTCCAAATAGAATTCATCACTGGAATAATTTCTGTAACTCATCACCAAGTTTCATGTTTTGCTCTGCTTACTTTTCTTAGAAAATTTCTACTGCATTCCTTGACCACTCAAACCACTGAACACTTTAACTTCTGAATTATTATTATTACTGCTCTACCGCTCTCCTCTCTCGATGATCTTTCATGAACAAAGTTTCTAGTAACTTCTTTTTGGAGTGCAGTGCAATGGCATGGTGCAAGTTCAAGGCAGCTATCAACAAATAAACCTTGAAAAAAAAAGTCTAGATTAGCACCACCTAATTTTATGCTATAAATTACTCCTATTTCTTAATGTCTTACCTTTAGCTCTGCTTACCCCACCCTCAGATGTGCTGGGAGTGGATCACGTCCATCCTCAGAGGCGATTTGTGGGCCCACAGAGTGCAGTGTCAGGAGCTCAGTATTGGCCATCTCCCAAAACCACAGACTGGAGGAGCTAAGCCACATTCTTGGGGATTGAGAAATTCTCTCTGTGAAGTACACTTTGTGCATTGTTCACATTTAGAGGGAAAAAAAAAAAAAAAAAAAATCCTGCCGTTGACCTTTGTCCCCAACTGCTCAAGATTTTGTGTTCTTTTCCCAGCAACAGTCTGAAAGTCTTCCACCTTTTCTTTCCTCTTTCAATACCCATGTTTACTGAGAGAAAACCATCTTCTCAACTTTTCTTTCACTGCTAAATGCATTTCATTCTGAGAACATTGGTGAAGACCTACCAAAACCTGTTGACTTTTAAAACTAGGGTTGGATGGTAGCACCTCCTACTTGATAAACTTTTCTTGTTTGTTTGTTTTTTTTTTTTAAATTAACCTCCCTGCTGTGTCTGTCCAGAGACATAGGATTTAGGGATTCCTTATTAAGCTAATTACTCCAAGTGCACTGTGAAGTCGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTCGGAAATCCCATGGACGGAGGAGCCTGGAAGGCTGCAGTCCATGGGGTCGCTGAGGGTTGGACACTACTGAGCGACTTCAGTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCGACCCACTCCAATGTTCTTGCCTGGAGAATCCCAGGGACGAGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTCGGACACGACTGAAGTGATTTAGCAGTAGCAGTACTGTGAAGAAGAATGCAGTTTATTGGTGACTCCTCCCCACCCCCATACTAGAACAATAGTAGATACATTAAATGTTGCAAAAAGCAAGGGGTGAAGGCTTCCTGGCAGTCTAGAGGTTGAGACTTTGCCATGTAGGCGGATGTGGGTTTGATCCCTGTCGGGGGTGGGGCACTAAGATCTCACATGCCTTGGTGGCCAAAAAAAAAAAAAAAAGGCCCCATAAAACAGAACCAGTGTTTTAACAACTGGTTCTTTGCCCAGCAACAGTTGGGAAGAAAATCCACAGCAAAAAAAAAAAAAAAAAAAAATCTTTAAAAATGTTACTAAAAGTATAATATTATCTTGCACTGAGAAATGTGGACTGAATAAAACATAATGTGAGAGCTATGAGTTCAGTTTTTGTTGAGGCTTACTGAGGACTGTAGTCCAGGAGACAGCCCCTCAGCTAGCTTCTCTAAAGCTGAGGAACTTCTCTAAAGAGGTAGATGGAGAAGTCAGTATATAAATGATTTGGTAAAGGGGGTATGTGCAGTCAAACCCAGATCTTGGTAGAAGGTTGCTGCTGGTTATGAGGAATAGATGTCTCCATTAATGATTTTAGTGCTTTTCTAGGTATGAGAAGATACAATAAATCTGGCTCATAAAAGTTTCTCCCGGAAAATGTCTAACTATCTGAAAGCCAGTTTTGCCAGTTTTCCTGGAACACAGGGTGACTTCTTTCAGATAAACTCTGAACTCCTTTCAGGGCATGATAAAGATTCTCATAGAATCAGATGGCAAGTGACAGTCTTTAGCTGGCAGAATCTATCATACTTGCTTTCAAGACTACTGACCTGTGGAGGTGGATTAATTTGCTACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTTTAAGCTAAATGCAGCTGATCCTTGAACATCATGGGGGTTGGGGACCTATCCTATGGGTAGGTGAGAATCCACGTATAACTTATAGTCACCCCCTCCTTATACACAGTTCCTCTATATCCATGGCTCTGCATCTGCAGATTCAACCAACTACTGATTGTGTAACACTCTGGTATTTAGTATCGAAAAAAATCCAAATATAAGTAGATCCACATGATTCAGATCTGTGTTGTTCAAGGGTTAACTGTACATTTCTATTTGCCTGAACCCAAGGAGGCTATTTTTAGCCTACCTTTCAAACTAGAGATTGCTTAGGAAGCTTTGGGTTTTTATTTCCAAAATGGGACTAATACTTACCTTGTAGTATAATTGGAAGAAGAAGGAAGATAACTGGTAGAATGGGTGCTGGCACTGGGGCAGGTGTAGGGTAGGGGCAGGATAGGCATTCACTCAATGTTAGCTGAATCAGAATTAAGCAGTTTGCAGTCTCTTGAAGGAGACAGTGCAGTGTGGTTGGTTTATGAGATGTGAGATCAGAGACTTGGGTTCTTCTCCCAGTGTGGCTGCTCAATATCTCTAATTTCCATTTTTTTTCATCTGTAGAATAGATATACTCATGAGGATTATAGTCTTATAGAAATGATGTAAGGTAATGCACATAAAGTACATGGTATAATATAGCCAAGTCTTATAAAGTTAAATATATATGTATTATATATATATAGACATATATATAGACTTGTCACATTCAACAGTAACATACAGACAACTGGATGACCAGTAGCAGAGTCTGGAAAGATATATAGGTTTATAGATTTTTGGTAGATGGATAAAATGATTAGAATAATTTCTCTAAATAGGTTGCATGCAGGGGTTGAGTTTTAAAGGCAGGAACAGATATGTCTGCAAGAGGCAACACTCCATGCTAAGCCAGTAAAATGGTGTTTAAGCTTGGGTATGAGAAAAGATGGGCTTCCCAGGTGGCACTAGTAGCAAAGAACCCACCTGCCAACGCAGGAGACGTAAGAGACGCGGGTTTGATCCCTGGGTCGGGAAGATCCCCTGGAGAAGGGCACAACAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGAACAGTGGAGCCTGGCGGGCTACAGTCCATAGGGTTGCAGAGAACTGGACATGACTGAAGCGACTTAGCATGCATGCACATATGCACTCATGATAAAAGATGTGTGTTTATGTGGAAGAAAGAGAAGGTGTAGTAGTGGGGCTGATCATAGAAGAGAGGAGGTTAAAAAGAATGTCAGATAGTGCAGACTTGGAGCTTTTTCCGAAATTCTTACCCACTTGGATTGAGTATCATCTGTGCACCCCTTCTTCCTCCTCCTGAGCACTTCCCCAGTTACTCTTCCAACTCTAGATTCAGGGAGTTACATTCCATTTACTCTTGACAGCTTTTCGATGGGAGTAAATATAGAATATGAAGTGACTTGAAGAGTTTTGTAAAGCTAATCCTCCTCCCCTTGTCCCTTCTATGAAAGTATCATAAATGCTTATTTCTCCCCCCACATTTGCAAGCCTTTTATTTTATGTTTCCATTATCCTGTTTCACCCTCTTCACTTGTGTTGGTGTGAATGAGGACCCTGGTCATGGTGATCGTGATGATCGTGATAAGGAGATAATAAGCTTTATTGAGGGTTTTCATGGACCTGGCACTATGCTAGGTATGTTCCACATGTTATCTCACTTAAATCTTGACAATAACCCACTACGTTGGGAGATGCCAACTCATTGGAAAAGACCCTGATGCTGGGACAGACTGAGGGCAGGAGGAAAATGGCGGGGACAGAGGATGAGATGATTGGATAGCATCACCGATGCAATGTACCTCAGTTTGAGCAAACTCCCGGAGATGGTGAAGGACAGGGAAGCCTGGCGTGCTGCAGTCCGTGGGGTTGCAGAGTTGGACACGAGTTAGTAACTGCTGAACAACAACTATTCCTATCTTACCAATGAACAAATCCAGTTCACAGAGGCTAAATCTCTCAAGCAAAGACAATAACCAAATGATGTGACTGGAATTCAAATCCTGGAGTCTGAGATCTTGATTACCACTGAAATGACAAAAGGTTGTGAACTGGATTTATAAAGAAGGGCATGTATGAGAACTTAGGCATTTCTACTCAAACATTAATGGTACTACTATGTACATAGTCTGATGTTTTGAAAGAGATTCATGGATTCTGGTTTGTGTCCAATTTGTGGCTCATCTTGATGCAAAATATGATTTTATTCTAGCTTTAGTGAAGTTAATCTATGTATATTTGCTTGTGATAACCCCTATATTTTCATTTTCACACAGTACTTATTTGATATGTTCAAGCTTAATAATATAGAACCAGAAAAAACCAGGGAGGGGGTGAGATGAATTGGGAGATTAGGACTGACATATATACGCTATTGATACTATGTATAAAATAGATGACTAATGAATGAGAGCCTACTCTACAGCACAGGGAACTCTACTTAGTGCTTAGTTGTGACCTAAATGGGAAGGGAATCCAAAAAAAGAGTGGCTGTATGAATAGGTATAGCTGATTCACTTTGCTGTACACTAGAAATTAATACCGGAGAAGGCAATGGAAACCCATTCCAGTACTCTTGCCTGGAGAATCCCAGGGATGGGGGAGCCTGGTGGGCTGCCCTCTATGGGGTCGCACAGAGTTGGACACGACTGAAGCGCTTTAGCAGCAGCAGCAGCAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTAAAAAAAAAACATGATACTATTCATTAAAAAAATCTAAATGATTATTTTTTCTTCAAATAACTCAAAATATTTTCAAGAACAATGTGGTTAACACTGTAGTATAAGGACACCAAGTGACCATCAAGTTATTTGGGGGTATTTATATCTGTTTTTTCCTATCTTATCTAAAATCTTTTTAACATTCCAG
Seq C2 exon
ACCAAAATCAAAAAAATGGCCAACCTTTCACAGCTAATGGAGAATGAAGTATTCATGGCCTTTGCCTCCTACACGACGATTGTGCTTTCAAAAATGATGTTTATGAGCACTGCAACTGCATTCTATAGACTGACAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008541:ENSBTAT00000011257:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0112413=MAPEG=PU(19.3=61.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]