HsaALTA0005382-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000173531 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr3:49685012-49685382:-
Coord C1 exon
chr3:49685262-49685382
Coord A exon
NA
Coord C2 exon
chr3:49685012-49685085
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
TTCCCCACTCCTCTAGGCAGGGC
3' ss Score
2.43
Exon sequences
Seq C1 exon
ACCAGGTGCAGTTTGAGAAGTGTGGCAAGAGGGTGGATCGGCTGGATCAGCGGCGTTCCAAGCTGCGCGTGGTTGGGGGCCATCCGGGCAACTCACCCTGGACAGTCAGCTTGCGGAATCG
Seq A exon
NA
Seq C2 exon
GGCCAGCATTTCTGCGGGGGGTCTCTAGTGAAGGAGCAGTGGATACTGACTGCCCGGCAGTGCTTCTCCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173531-31-32,31-31,31-30-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(7.7=41.5)
A:
NA
C2:
PF0008921=Trypsin=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACTCACCCTGGACAGTC
R:
CCGGGCAGTCAGTATCCACT
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains