MmuALTA1024582-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000032591 | Mst1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:MGI Symbol;Acc:MGI:96080]
Coordinates
chr9:108083594-108083941:+
Coord C1 exon
chr9:108083594-108083702
Coord A exon
NA
Coord C2 exon
chr9:108083868-108083941
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
ATCTTTACTCCTCTAGACAGGGC
3' ss Score
3.58
Exon sequences
Seq C1 exon
ACCAGGTGGTGTTTGAAAAGTGTGGCAAGAGAGTTGACAAGAGTAATAAACTTCGTGTGGTGGGAGGCCATCCTGGGAACTCCCCATGGACGGTCAGCTTGCGGAATCG
Seq A exon
NA
Seq C2 exon
GGCCAGCATTTCTGTGGGGGCTCCCTAGTGAAGGAGCAGTGGGTACTGACTGCCCGGCAATGCATCTGGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032591-20-19,20-18-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(7.7=45.9)
A:
NA
C2:
PF0008921=Trypsin=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAACTTCGTGTGGTGGGAGG
R:
CCACTGCTCCTTCACTAGGGA
Band lengths:
105-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types