HsaALTA0005398-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000057935 | MTA3
Description
metastasis associated 1 family member 3 [Source:HGNC Symbol;Acc:HGNC:23784]
Coordinates
chr2:42697776-42704318:+
Coord C1 exon
chr2:42697776-42697834
Coord A exon
NA
Coord C2 exon
chr2:42704197-42704318
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
3' ss Seq
TTTAATTTCATTGAAAGCAGCAA
3' ss Score
0.57
Exon sequences
Seq C1 exon
AAACGTCTAAAAGCAGCAGAAGCTGAGAGTAAACTGAAACAAGTATATATCCCAACCTA
Seq A exon
NA
Seq C2 exon
CAAACCAAATCCCAACCAAATATCCACTAGTAATGGGAAGCCTGGTGCTGTGAATGGAGCTGTGGGGACCACGTTCCAGCCTCAGAATCCTCTCTTAGGGAGAGCCTGTGAGAGCTGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000057935-50-171,50-170-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.939
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0032022=GATA=PU(13.2=11.9)
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCTAAAAGCAGCAGAAGC
R:
GCACCAGGCTTCCCATTACTA
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development