RnoALTA0024836-3/5 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000004685 | Mta3
Description
metastasis associated 1 family, member 3 [Source:RGD Symbol;Acc:1306803]
Coordinates
chr6:6998565-7002927:+
Coord C1 exon
chr6:6998565-6998623
Coord A exon
chr6:7002806-7002835
Coord C2 exon
chr6:7002836-7002927
Length
30 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
3' ss Seq
CTCTGTTTCGTTGAAAGCAGCAA
3' ss Score
2.47
Exon sequences
Seq C1 exon
AAGCGCCTAAAAGCTGCGGAAGCCGAGAGCAAACTGAAACAAGTGTACATCCCAACTTA
Seq A exon
CAAACCAAATCCCAACCAAATCTCCAGCAG
Seq C2 exon
CAACGGCAAGGCTGGCACTGTGAATGGAGCTGTGGGGACCCCGTTCCAGCCCCAGAGCGCACTCCTAGGACGAGCCTGTGAGAGCTGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004685-15-22,15-21,15-20,15-19,15-18-3/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0032022=GATA=PU(13.2=11.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGAGAGCAAACTGAAACAA
R:
CTCACAGGCTCGTCCTAGGAG
Band lengths:
120-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]