HsaALTA0005506-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000071909 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:15576]
Coordinates
chr2:171257991-171259505:+
Coord C1 exon
chr2:171257991-171258201
Coord A exon
NA
Coord C2 exon
chr2:171259361-171259505
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGCAAGT
5' ss Score
3.26
3' ss Seq
TCTTCTCTCTCATGCAGTAGTGC
3' ss Score
2.68
Exon sequences
Seq C1 exon
CTGCCTCTGTTCTGTGCATTAGCCCTGAAGAGCTCCAGGAGGCCCTCACCTCCCACTGTGTGGTCACCCGGGGCGAGACCATCATCCGTGCCAACACTGTAGACAGGGCTGCGGACGTTCGAGACGCCATGTCCAAAGCCCTGTATGGGAGGCTCTTCAGCTGGATTGTGAATCGCATTAATACACTCCTGCAGCCAGACGAAAACATATG
Seq A exon
NA
Seq C2 exon
TGCAGGAGGTGGAATGAATGTGGGGATCTTGGATATCTTTGGATTCGAGAATTTTCAGAGAAATTCATTTGAGCAGCTCTGCATAAACATCGCCAATGAGCAAATCCAGTACTATTTCAATCAGCATGTTTTTGCTCTTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000071909-20-22,20-21-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGGAGGCTCTTCAGCTGG
R:
CCCCACATTCATTCCACCTCC
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)