RnoALTA0025400-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000030022 | Myo3b
Description
myosin IIIB [Source:RGD Symbol;Acc:1560313]
Coordinates
chr3:56527645-56529155:+
Coord C1 exon
chr3:56527645-56527855
Coord A exon
NA
Coord C2 exon
chr3:56529011-56529155
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGCAAGT
5' ss Score
3.26
3' ss Seq
TGTTTTCTTTCTCACAGTAGTGC
3' ss Score
4.82
Exon sequences
Seq C1 exon
CTGCCTCCGTGCTCTGCATCAACTCTGAAGAGCTTCAGGAGGCCCTCACGTCCCACTGTGTGGTCACAAGAGGCGAGACCATTGTCCGAGCCAACACAGTGGACAGGGCTGAAGATGTCAGGGACGCCATGTCTAAGGCCCTCTATGGAAGGCTGTTCAGCTGGATTGTGAATCGAATCAACACACTCCTGCAGCCAGATAAAAACATATG
Seq A exon
NA
Seq C2 exon
TGCAGAGGACAGGATGAATGTGGGCATCCTGGACATTTTTGGCTTTGAGGATTTCCAGAGGAATTCCTTTGAACAGCTCTGCATAAATATCGCCAACGAACAGGTCCAGTTCTACTTCAATCAGCACGTGTTCGCTCTTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030022-23-21,23-20-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTGTTCAGCTGGATTGTG
R:
GTCCAGGATGCCCACATTCAT
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]