HsaALTA0005634-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000188566 | NDOR1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:29838]
Coordinates
chr9:140110351-140110618:+
Coord C1 exon
chr9:140110351-140110469
Coord A exon
chr9:140110519-140110545
Coord C2 exon
chr9:140110546-140110618
Length
27 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
GGGAGGGAGCTCCGGCTCAGCCC
3' ss Score
-7.91
Exon sequences
Seq C1 exon
GAAACTTCTTGTTTTTTGGCTGCCGCTGGCGGGACCAAGACTTCTACTGGGAGGCTGAGTGGCAGGAGCTGGAGAAGCGGGACTGTCTGACCCTCATCCCTGCCTTCTCCCGGGAACAG
Seq A exon
CCCCCAGCCCTGTTCTCTGCCCTACAG
Seq C2 exon
GAGCAGAAAGTATATGTGCAGCACCGGCTCCGGGAGCTGGGGTCGCTTGTGTGGGAACTGCTGGACCGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188566-13-15,13-14-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=FE(36.4=100),PF054027=PqqD=PU(14.0=30.0)
A:
NA
C2:
PF0017516=NAD_binding_1=FE(29.0=100),PF054027=PqqD=FE(36.0=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGGGACCAAGACTTCTACT
R:
GCCGGTGCTGCACATATACTT
Band lengths:
120-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)