RnoALTA0025963-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000010616 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:RGD Symbol;Acc:1308479]
Coordinates
chr3:2467446-2467706:-
Coord C1 exon
chr3:2467588-2467706
Coord A exon
chr3:2467519-2467538
Coord C2 exon
chr3:2467446-2467518
Length
20 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTGGGATGGCTGAGACTTAGCCT
3' ss Score
-9.31
Exon sequences
Seq C1 exon
GAAACGTCTTATTCTTCGGCTGCCGCCAGCGGGATCAGGACTTCTACTGGCAGACTGAGTGGCAGGAGCTAGAGCAGAGGGGCTGCCTGACCCTGGTTACAGCCTTCTCCCGGGAGCAG
Seq A exon
CCTCTGATACCTACCTGCAG
Seq C2 exon
GCACAGAAGGTGTATGTGCAGCACCGGCTCCGAGAGCTGGGGCCACTTGTCTGGGAGCTGCTGGATGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010616-13-23,13-22-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=FE(36.4=100)
A:
NA
C2:
PF0017516=NAD_binding_1=FE(29.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACTGGCAGACTGAGTGGC
R:
GGTGCTGCACATACACCTTCT
Band lengths:
102-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]