HsaALTA0005965-2/5 @ hg38
Alternative 3'ss
Gene
ENSG00000160991 | ORAI2
Description
ORAI calcium release-activated calcium modulator 2 [Source:HGNC Symbol;Acc:HGNC:21667]
Coordinates
chr7:102433530-102436333:+
Coord C1 exon
chr7:102433530-102433661
Coord A exon
chr7:102436225-102436229
Coord C2 exon
chr7:102436230-102436333
Length
5 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
TTCTCTGAATTCTCCCCAAGGGA
3' ss Score
5.85
Exon sequences
Seq C1 exon
GGGGGACCCCGCGCGACCGGCGGAAGGAGGGAGGGGGCCGCGCTCGGCGCCCCGGCCGGGCCACTGGGCCACAGGCCACGCGGCCACGCAGTCCGAGCGGGAGCCGAGCCGGGCGGGGCGAGGGCAGCTCCG
Seq A exon
GGAAG
Seq C2 exon
GAACGTCCCAGGGATGGAAGTGCTTGGATGCGGTGCTGCTGGCTGCGGATGTGCGCAAGGAGATGGGATGGAGAGCCTGAGTTGGCATTCGTATAAATGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160991-1-12,1-11,1-10,1-9,1-8-2/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains