HsaALTA0005969-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000115947 | ORC4L
Description
origin recognition complex, subunit 4 [Source:HGNC Symbol;Acc:8490]
Coordinates
chr2:148710041-148712964:-
Coord C1 exon
chr2:148712916-148712964
Coord A exon
NA
Coord C2 exon
chr2:148710041-148710093
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
ATGCTCTTATTTTATCTTAGGTG
3' ss Score
8.72
Exon sequences
Seq C1 exon
GGAAGCTTTGCTGAAAACCTTTCATTTCTTCTGGAAGCTTTAAAAAAAG
Seq A exon
NA
Seq C2 exon
GTGACCGAACTAGCAGTTGCCCAGTGATCTTCATATTAGATGAATTTGATCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115947-14-18,14-17-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PD(11.2=70.6)
A:
NA
C2:
PF131911=AAA_16=PD(28.4=86.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCTTTGCTGAAAACCTT
R:
TCATCTAATATGAAGATCACTGGGCA
Band lengths:
92-94
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)