MmuALTA0012563-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026761 | Orc4
Description
origin recognition complex, subunit 4 [Source:MGI Symbol;Acc:MGI:1347043]
Coordinates
chr2:48927096-48929729:-
Coord C1 exon
chr2:48929681-48929729
Coord A exon
chr2:48927132-48927247
Coord C2 exon
chr2:48927096-48927131
Length
116 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAT
5' ss Score
7.87
3' ss Seq
TTTTTTTTTTCTTTTTTTAGGTG
3' ss Score
13.56
Exon sequences
Seq C1 exon
GGAAGCTTTGCTGAAAACCTTTCATTTCTTCTGGAAGCTTTGCAAAAAG
Seq A exon
GTGACCGGACTAGCAGTTGCCCAGTGATCTTCATACTGGATGAATTTGATATTTTTGCTCATCAGAAAAATCAAACACTCCTTTATAATCTTTTTGACATTTCTCAATCTGCACAG
Seq C2 exon
ACACCAGTAGCAGTTATTGGACTTACATGTAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026761-21-22,21-21-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=FE(10.4=100)
A:
NA
C2:
PF131911=AAA_16=PD(28.6=86.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCTTTGCTGAAAACCTT
R:
TCTACATGTAAGTCCAATAACTGCT
Band lengths:
82-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types