HsaALTA0006237-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000043143 | JADE2
Description
jade family PHD finger 2 [Source:HGNC Symbol;Acc:HGNC:22984]
Coordinates
chr5:134576768-134578597:+
Coord C1 exon
chr5:134576768-134576896
Coord A exon
NA
Coord C2 exon
chr5:134578497-134578597
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CTCCTCTCTCCCCTCAGCAGGCC
3' ss Score
8.48
Exon sequences
Seq C1 exon
AGCGGTCTGGGAGGAGAGCAAAGGGCAAGAAGAGTGACTCGAAGAGGAAGGGCTGCGAGGGCTCCAAGGGCAGCACTGAGAAGAAAGAGAAAGTGAAGGCGGGGCCTGACTCAGTCCTGGGGCAGCTGG
Seq A exon
NA
Seq C2 exon
GCCTGTCCACCTCATTCCCCATCGATGGCACCTTCTTCAACAGCTGGCTGGCACAGTCGGTGCAGATCACAGCAGAGAACATGGCCATGAGCGAGTGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000043143-39-34,39-33-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.856 A=NA C2=0.901
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAGAAAGTGAAGGCGGGG
R:
CAGCTGTTGAAGAAGGTGCCA
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development