HsaINT0123916 @ hg38
Intron Retention
Gene
ENSG00000043143 | JADE2
Description
jade family PHD finger 2 [Source:HGNC Symbol;Acc:HGNC:22984]
Coordinates
chr5:134573645-134579814:+
Coord C1 exon
chr5:134573645-134573762
Coord A exon
chr5:134573763-134578493
Coord C2 exon
chr5:134578494-134579814
Length
4731 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
TGCCTCCTCTCTCCCCTCAGCAG
3' ss Score
9.89
Exon sequences
Seq C1 exon
GTTAGAAATCTGTGCTACATGGTGACAAGGCGCGAGAGAACGAAACACGCCATCTGCAAACTCCAGGAGCAGATATTCCACCTGCAGATGAAACTTATTGAACAGGATCTGTGTCGAG
Seq A exon
GTAGGCGCCTTCCCCACCTGCCGCCGCCACCTCCCTGTGCCCTCTCTTGCGGGGCTGGGTCCCAAGGAGGGTGTGTCTTTGGATCCTGGTGGGGGTATGTGCGTGGAGCCAAGGGCCACTGGCCCCCACTCCTACCCTTCACCATCCAATTAGTAGGCCCAGACGGGGGCCTGCAAGGGTCCTGAGTTGTGCGTCACTAGGCAGAGAGCCAGAGGTTGGAATGTGGGCATCAGGCCTGCCCTCAGGGAGCTTTCTGGTTGACTAGGCCACAGCAGTTCAGGAGCTGATTGCATGTGAACAGGTACAGAGAAGAAGTCCTAGTGGCTCTCTGCTGGTGCTGAGGCAGGAAGGGCCAGAAGCTGGTGAGCTTCCCTGAACCCTGGTGTGCCTGGGAGTCAGTTCCGAAGAAGGCAGCTGTCCCAGAGATGTGACAGGACCTGGCTGTTGTTTCTCTCTGACCCTAACAGGATTTATGCCCTGCATCCGCGGTGTTTTTCACTGTTTCATTCTTATTATTCTTATTCTCTTGGCGTCACATGCGTTTAGTGGATCTGGAAATCAAAGGCTGAAGGAAGCGCTGACATTGATCGTATCTGTTAATTGTGGATATTGCCAGACACAGGGCCCTTCTTGGAGCGTATACATGTTAAGAAGGGCAACACTTAGCCCCCAAAACAGTACCCCAGTGTTGCGTTTACATGCAGCAGAAATAGCTGGATGGAGAGAGATTTTGAGCCAGGGTCTGCCAATGCCACTTCAGCCTCAGGGCTGAGCTGGGCCTGGAGAGGAAAGCTGCTGAGCCACCGTTGGAGCAAATGACTGAGGACCTCTGCTGCCCCTACTTCTGCCCCAGAGCTGAGCTGACCTGATTGTGCTTTGGCATCACCACCCACTCTGGCCCCAACATCTAGCCTTGCCAAGTTCAGGTGCTAGTCATGACCATGTAGAGCTCACCGTGTACCCAAAGACTGTGGCAGCTTCCTGGCTGCTGGAGCTTTCCAGGCCCCCTATCTTCTGTTTATTCACTCAGCCAGCATTAACTGAGCATGGACTGGATAGGGTTGCTGCCCTTGTGGAATGCACCATCTGGAGAGAGAGAGGAATGTGGTATCGCAGACGCTACAGTTGCTGCCAGTTTAGGGATAGAAGTATCAGGGATGTCTTCCCAGAAGCAGTGATGCTCCAACAACATCTCAGGCACTTGGCTGTGGCCACATATCGGCTGCAGAAGGAGAAGCCCATGCAAGGCACCCACAGTTGAGGAAGCAGAGGGTGGCAAGCCACGAGCAGTGCCCTCAGGCACAGGATTCCAGAAGCATGGGCAAGAGCCTGGAGGGTCCACATCCCCACATTGGTTCTGGGGACATTTGCAACTCCTTGTCTTGAGTGTCAACAACAGGCAGCTCTTTGTTCAGGGCAGGGCAGGGTATTTGGAGATGACTGGTTTGCCCTGTCCAAAGCTGCTGCTCACACTGTTGAGAGGCTTGACGCCTGGGGTGGGACATGGGCTGTGTGCATATCGGCGAGGCTGTCTGGCCTGGCGGCTGGACAAAGCCTCCTAGTGGAGATGATATTTGGCCTGTGAACTGAATCAGGTGAAGGATAGGAGAAGAAAACAGCATATTTGGAGACTTAGTGGCCAGAGCATGTCTTGGCAGAGAAACTGGAAGGAGGCTGGAATGGCTGCACCAGGCAGAAGGAAGACTCCTAAAGTGGGGATGACGGGTAACCTGGGTCACATGTGCGAGATCTTCTTGTAGCCTGGGGGAGGAGCTTACACTGTCCTGAGAGCAGTGGGGAGCCTCAGGAGCCTGCCTCCAGAGTATCTAGGCATTAGTTACATGCCATGTTACAGATGAGATTGCCCAGGCACAGTGGCTCATGCCTAAAATCCCAGCACTTTGGGAGACCACAGTGGGAAGATCACTTGAAGCCAGGAGTTCCAGACCAGCCTGTCTCTACAAAAAAAAAAAAATACAAAAATTAGCTGAGCATGGTGACACATGCCTGTATTCCTAGCTGCTTGGGGAGCAGAAGTAGGATTGCTTGAGCCCAGTAGTTTGAGGCTGCAAGCGAGCTATGATTACACCACTGTACTCCAGCCTGGGTAACAGAGCCAGGCTCTGTCTCTAAAAAATAAATAAATAAACAGATGTGGCCAGGCACAGTGGCTCGCACCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGAAGGATTACTGGAGCCCAAGAGTTCAAGACCAGTCTGGGCAAAATAGCAAGACCCTGTCTCTACAAAATTTGAAAATTAGCCGGGTGTGGTGGCATGCACCTGTGGTCCCAGCTACTCAGGAGGCTGAGGCTGGAGGATCGCTTGAGCCTGGGAGGTCAAGGCTGCAGTAAACTATGATTGTACTACTGCGCTCCATCATGGGCAACAGAGCAAGACTCTCTCTCAAAACAAACCAAAACAGATGAGACTGAGGCCTGGCCTGAACTGAAAGGATACAAGGGCCAGGGGTGCACCCTGAATCTCCCATCTAGTTTGCTGCCTGACTTTGAAAGCCAACCAAGAGACCATGGCAGGAGACTGGTTCAGGGTTGCTGACCCTGGGGTTAGGAATGGAACCCAAGCCTCTTGACCCCTCAGGTAGTGTTCCTTCCACCTACATGTCTAGCTCCTCAGCCTGGCATTCAAGGCCCTGCCCTGTCCAGACTCCCTTCCAGCCATTCTTCCCACCACCCACACTCTCTCCCAAGACTACAGGTTGTGCAGGTCAGACTGGAGTCCAGGTCCTGCGAGGGCCTCTCCTCGTGGCCCTGTGGCCACCCCAAGTCCCCCACAGGCCACAGTGGACAGTTGGTCCACCCCACCATGCCAGCCATCCCCTAACTCCAACCTTTTTGCTGTGGAGGGTGAGCACTGGCTGATGGAGGACTCCTGGGCTGCCACGCAGGGATCTTGGTGCTGACCGAGGCCACTCAGGGTAACCATCTCCCTCCTCCTCTCACTTTCCCTGACACAGAGCGGTCTGGGAGGAGAGCAAAGGGCAAGAAGAGTGACTCGAAGAGGAAGGGCTGCGAGGGCTCCAAGGGCAGCACTGAGAAGAAAGAGAAAGTGAAGGCGGGGCCTGACTCAGTCCTGGGGCAGCTGGGTGAGTGAGGGCCATGCTGGCCTGCAGACACGGCAGGCTTGACCATCACCACGCTTGCAGCTCTGTCTGCCCTGCGGAAGGCCAGCTGCACAGAGTAGGAGACTGAGGCTCAAGAGCGGTAACCAGGCCCTTGCTTGCCCAGGTGCACACACCTTCCACCCACAAAGGAGACAGATCTCAGAGCCCCGTGTGACATCCTGGGAAATGCCCCGTCTGTAGACCTGGATGGAGGCTGGGCCACGCCCACTCAGGAACTGTCCAGTCATTCCCCTGGCTGGGGGGTCCTGGGTGCTGGATTTTCCCAGAGGCCCCTGGGACAGCCCCATGCTGGGAGGGGAGGATCTGCCAGAAAGCCCCATCCTTGTCCTACTCTCCCAGAATCCTCTAAGTGGGCCCTTCCTGCAACAGCAGCAGACTCTCCTGGAGCTGCCCAGAGGAGTGGCTGCAGGCTCTGGCCCTGCCCACCACCTCCACTGTCCCAGGCCTCCTGTTAGGCAGAGCAGCCTAATGGGAGCAGTGTGACTCATGGACCTCACGTGCTTCCTCCAGAGATCTCAGGGAGCATCATGGAGTCCCCTTCCAGACCTTGCCTCTGGGATGGAAGCCCCAGGTCATCCTTTCTGTCCCTCTGTCTCAAGAAGGGGACAACCCAGGCGTGGTGGTGCATGCCTGTATTCCTAGCTGCTCAGGAGGCTGAGTTGGGAGGATCGCTTGAGCCCAGGAGGTTGAGGCTGCAGTGCACCATGATCATGCCACTGCACTCCAGCCTGGGTGACAGAGCAAGACCCTGTTCCTTCATTTCACACCCCTCCCGCAAAAAGAAGGGGATAACTTGGGTGTCTAACAGGAAACCCAGTCTCCCGTCTCGCCAGCTGCCCCCTCCCAAGACCTCGGTAAGGAAGGAAGGCTCTGCCGCCCTCACATCTGCTGGCGTCTCACTTGCCTCCCCTCTCCCTGACATCCAGGAGGGACTGGATACTGCTTGCTACCCCTATTCGTACCTGATCCCTTTATCCATGCTCTTTGCTGCAAGCGCTGGGAGGCAACGCTTATAAAGACTGAGCGCCCTCTGGCGGCCTGAGGGCATTTTCCTCCAGATTCCTCCTTCCCCAACCCCACCAGAATGGGGGTAGTGGGCAGGTCCAACTTCGTGGGTAGCAACCTGTGCAGTGCCACGGGGTCCTTGTTCTTGGTTAATGCTCTGCTGCTGCCACCTTGAATTTTCTTTCCCATGGCAGGCTTTCTGGTAAAATCCAAAAAACCTGCTAGACAAACTAAAAGAGCTATAACACTCCACCTTGAAATTCTTAATAATATTTGAACAAGGAGCCTATATTTTCATTTTACACTCTAGCCCACAAATTATGAAGCCCATCTTGAGGGCAGCACGTCCTTCTGGAGAGAAGCGTATAAGTAGTCCCTACTCTTTGGTGGTGTTGGCAGGAGGGATGGACAAAACAAGATAGCTCACCTGGGTCTGGCACAGGGGGACAGAGAGAAGACGATGCCTGGTGGTGTGCTGGGAGCGTCAGTGGGCTTCCTGAAAGGGTGGGACACACGTCTGCTGGCGTCTCACTTGCCTCCTCTCTCCCCTCAG
Seq C2 exon
CAGGCCTGTCCACCTCATTCCCCATCGATGGCACCTTCTTCAACAGCTGGCTGGCACAGTCGGTGCAGATCACAGCAGAGAACATGGCCATGAGCGAGTGGCCACTGAACAATGGGCACCGCGAGGACCCTGCTCCAGGGCTGCTGTCAGAGGAACTGCTGCAGGACGAGGAGACACTGCTCAGCTTCATGCGGGACCCCTCGCTGCGACCTGGTGACCCTGCTAGGAAGGCCCGAGGCCGCACCCGCCTGCCTGCCAAGAAGAAACCACCACCACCACCACCGCAGGACGGGCCTGGTTCACGGACGACTCCAGACAAAGCCCCCAAGAAGACCTGGGGCCAGGATGCAGGCAGTGGCAAGGGGGGTCAAGGGCCACCTACCAGGAAGCCACCACGTCGGACATCTTCTCACTTGCCGTCCAGCCCTGCAGCCGGGGACTGTCCCATCCTAGCCACCCCTGAAAGCCCCCCGCCACTGGCCCCTGAGACCCCGGACGAGGCAGCCTCAGTAGCTGCTGACTCAGATGTCCAAGTGCCTGGCCCTGCAGCAAGCCCTAAGCCTTTGGGCCGGCTCCGGCCACCCCGCGAGAGCAAGGTAACCCGGAGATTGCCGGGTGCCAGGCCTGATGCTGGGATGGGACCACCTTCAGCTGTGGCTGAGAGGCCCAAGGTCAGCCTGCATTTTGACACTGAGACTGATGGCTACTTCTCTGATGGGGAGATGAGCGACTCAGATGTAGAGGCCGAGGACGGTGGGGTGCAGCGGGGTCCCCGGGAGGCAGGGGCAGAGGAGGTGGTCCGCATGGGCGTACTGGCCTCCTAACTCACCCCCTTCCCTGTCCCAGGCCCTGCCCTGGTCCCCCCACAAGGCCTCAGCCCAGTCACAACTGCCATTTCCAGTCTCTGCTGAGTGTCCCAGACCCTCGAGGCTGCCACTCCGTCGTGGTTTTATTTTTAATATAGAGAGAGTTTTGAATTCTACACTGTTGTCTTTCCTCTGTGCTGGCCTAGGACATTAGGATTCCTTCCACGGCTCCGGCCGCTAGGACCCTGCCAGGTCCCGCGCACCATCCCTGCCCTGCCCACGTGGTATTGCTGGGCTCCTGGCTAGATGCAAGCAAGGTGGACAAGAGCTCAGGACTCCAGCCCACTGCCACTGGGTGACACAGACTGTCGTTTGGGCATTATTTCATGGCAGATGGGCCAGTCCAGGGCCTACCCCGCCTTGCCCCCAGATCCCACTGGGGTCCATTTGGGGGGTCCTGCTACACTCCACCGATCCCCAAGGAAGTATAATAAACGATACCCAGCCAGAGTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000043143:ENST00000361895:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=NA C2=0.898
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development