HsaINT0123916 @ hg19
Intron Retention
Gene
ENSG00000043143 | PHF15
Description
PHD finger protein 15 [Source:HGNC Symbol;Acc:22984]
Coordinates
chr5:133909335-133918918:+
Coord C1 exon
chr5:133909335-133909452
Coord A exon
chr5:133909453-133914186
Coord C2 exon
chr5:133914187-133918918
Length
4734 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CTCCTCTCTCCCCTCAGCAGGCC
3' ss Score
8.48
Exon sequences
Seq C1 exon
GTTAGAAATCTGTGCTACATGGTGACAAGGCGCGAGAGAACGAAACACGCCATCTGCAAACTCCAGGAGCAGATATTCCACCTGCAGATGAAACTTATTGAACAGGATCTGTGTCGAG
Seq A exon
GTAGGCGCCTTCCCCACCTGCCGCCGCCACCTCCCTGTGCCCTCTCTTGCGGGGCTGGGTCCCAAGGAGGGTGTGTCTTTGGATCCTGGTGGGGGTATGTGCGTGGAGCCAAGGGCCACTGGCCCCCACTCCTACCCTTCACCATCCAATTAGTAGGCCCAGACGGGGGCCTGCAAGGGTCCTGAGTTGTGCGTCACTAGGCAGAGAGCCAGAGGTTGGAATGTGGGCATCAGGCCTGCCCTCAGGGAGCTTTCTGGTTGACTAGGCCACAGCAGTTCAGGAGCTGATTGCATGTGAACAGGTACAGAGAAGAAGTCCTAGTGGCTCTCTGCTGGTGCTGAGGCAGGAAGGGCCAGAAGCTGGTGAGCTTCCCTGAACCCTGGTGTGCCTGGGAGTCAGTTCCGAAGAAGGCAGCTGTCCCAGAGATGTGACAGGACCTGGCTGTTGTTTCTCTCTGACCCTAACAGGATTTATGCCCTGCATCCGCGGTGTTTTTCACTGTTTCATTCTTATTATTCTTATTCTCTTGGCGTCACATGCGTTTAGTGGATCTGGAAATCAAAGGCTGAAGGAAGCGCTGACATTGATCGTATCTGTTAATTGTGGATATTGCCAGACACAGGGCCCTTCTTGGAGCGTATACATGTTAAGAAGGGCAACACTTAGCCCCCAAAACAGTACCCCAGTGTTGCGTTTACATGCAGCAGAAATAGCTGGATGGAGAGAGATTTTGAGCCAGGGTCTGCCAATGCCACTTCAGCCTCAGGGCTGAGCTGGGCCTGGAGAGGAAAGCTGCTGAGCCACCGTTGGAGCAAATGACTGAGGACCTCTGCTGCCCCTACTTCTGCCCCAGAGCTGAGCTGACCTGATTGTGCTTTGGCATCACCACCCACTCTGGCCCCAACATCTAGCCTTGCCAAGTTCAGGTGCTAGTCATGACCATGTAGAGCTCACCGTGTACCCAAAGACTGTGGCAGCTTCCTGGCTGCTGGAGCTTTCCAGGCCCCCTATCTTCTGTTTATTCACTCAGCCAGCATTAACTGAGCATGGACTGGATAGGGTTGCTGCCCTTGTGGAATGCACCATCTGGAGAGAGAGAGGAATGTGGTATCGCAGACGCTACAGTTGCTGCCAGTTTAGGGATAGAAGTATCAGGGATGTCTTCCCAGAAGCAGTGATGCTCCAACAACATCTCAGGCACTTGGCTGTGGCCACATATCGGCTGCAGAAGGAGAAGCCCATGCAAGGCACCCACAGTTGAGGAAGCAGAGGGTGGCAAGCCACGAGCAGTGCCCTCAGGCACAGGATTCCAGAAGCATGGGCAAGAGCCTGGAGGGTCCACATCCCCACATTGGTTCTGGGGACATTTGCAACTCCTTGTCTTGAGTGTCAACAACAGGCAGCTCTTTGTTCAGGGCAGGGCAGGGTATTTGGAGATGACTGGTTTGCCCTGTCCAAAGCTGCTGCTCACACTGTTGAGAGGCTTGACGCCTGGGGTGGGACATGGGCTGTGTGCATATCGGCGAGGCTGTCTGGCCTGGCGGCTGGACAAAGCCTCCTAGTGGAGATGATATTTGGCCTGTGAACTGAATCAGGTGAAGGATAGGAGAAGAAAACAGCATATTTGGAGACTTAGTGGCCAGAGCATGTCTTGGCAGAGAAACTGGAAGGAGGCTGGAATGGCTGCACCAGGCAGAAGGAAGACTCCTAAAGTGGGGATGACGGGTAACCTGGGTCACATGTGCGAGATCTTCTTGTAGCCTGGGGGAGGAGCTTACACTGTCCTGAGAGCAGTGGGGAGCCTCAGGAGCCTGCCTCCAGAGTATCTAGGCATTAGTTACATGCCATGTTACAGATGAGATTGCCCAGGCACAGTGGCTCATGCCTAAAATCCCAGCACTTTGGGAGACCACAGTGGGAAGATCACTTGAAGCCAGGAGTTCCAGACCAGCCTGTCTCTACAAAAAAAAAAAAATACAAAAATTAGCTGAGCATGGTGACACATGCCTGTATTCCTAGCTGCTTGGGGAGCAGAAGTAGGATTGCTTGAGCCCAGTAGTTTGAGGCTGCAAGCGAGCTATGATTACACCACTGTACTCCAGCCTGGGTAACAGAGCCAGGCTCTGTCTCTAAAAAATAAATAAATAAACAGATGTGGCCAGGCACAGTGGCTCGCACCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGAAGGATTACTGGAGCCCAAGAGTTCAAGACCAGTCTGGGCAAAATAGCAAGACCCTGTCTCTACAAAATTTGAAAATTAGCCGGGTGTGGTGGCATGCACCTGTGGTCCCAGCTACTCAGGAGGCTGAGGCTGGAGGATCGCTTGAGCCTGGGAGGTCAAGGCTGCAGTAAACTATGATTGTACTACTGCGCTCCATCATGGGCAACAGAGCAAGACTCTCTCTCAAAACAAACCAAAACAGATGAGACTGAGGCCTGGCCTGAACTGAAAGGATACAAGGGCCAGGGGTGCACCCTGAATCTCCCATCTAGTTTGCTGCCTGACTTTGAAAGCCAACCAAGAGACCATGGCAGGAGACTGGTTCAGGGTTGCTGACCCTGGGGTTAGGAATGGAACCCAAGCCTCTTGACCCCTCAGGTAGTGTTCCTTCCACCTACATGTCTAGCTCCTCAGCCTGGCATTCAAGGCCCTGCCCTGTCCAGACTCCCTTCCAGCCATTCTTCCCACCACCCACACTCTCTCCCAAGACTACAGGTTGTGCAGGTCAGACTGGAGTCCAGGTCCTGCGAGGGCCTCTCCTCGTGGCCCTGTGGCCACCCCAAGTCCCCCACAGGCCACAGTGGACAGTTGGTCCACCCCACCATGCCAGCCATCCCCTAACTCCAACCTTTTTGCTGTGGAGGGTGAGCACTGGCTGATGGAGGACTCCTGGGCTGCCACGCAGGGATCTTGGTGCTGACCGAGGCCACTCAGGGTAACCATCTCCCTCCTCCTCTCACTTTCCCTGACACAGAGCGGTCTGGGAGGAGAGCAAAGGGCAAGAAGAGTGACTCGAAGAGGAAGGGCTGCGAGGGCTCCAAGGGCAGCACTGAGAAGAAAGAGAAAGTGAAGGCGGGGCCTGACTCAGTCCTGGGGCAGCTGGGTGAGTGAGGGCCATGCTGGCCTGCAGACACGGCAGGCTTGACCATCACCACGCTTGCAGCTCTGTCTGCCCTGCGGAAGGCCAGCTGCACAGAGTAGGAGACTGAGGCTCAAGAGCGGTAACCAGGCCCTTGCTTGCCCAGGTGCACACACCTTCCACCCACAAAGGAGACAGATCTCAGAGCCCCGTGTGACATCCTGGGAAATGCCCCGTCTGTAGACCTGGATGGAGGCTGGGCCACGCCCACTCAGGAACTGTCCAGTCATTCCCCTGGCTGGGGGGTCCTGGGTGCTGGATTTTCCCAGAGGCCCCTGGGACAGCCCCATGCTGGGAGGGGAGGATCTGCCAGAAAGCCCCATCCTTGTCCTACTCTCCCAGAATCCTCTAAGTGGGCCCTTCCTGCAACAGCAGCAGACTCTCCTGGAGCTGCCCAGAGGAGTGGCTGCAGGCTCTGGCCCTGCCCACCACCTCCACTGTCCCAGGCCTCCTGTTAGGCAGAGCAGCCTAATGGGAGCAGTGTGACTCATGGACCTCACGTGCTTCCTCCAGAGATCTCAGGGAGCATCATGGAGTCCCCTTCCAGACCTTGCCTCTGGGATGGAAGCCCCAGGTCATCCTTTCTGTCCCTCTGTCTCAAGAAGGGGACAACCCAGGCGTGGTGGTGCATGCCTGTATTCCTAGCTGCTCAGGAGGCTGAGTTGGGAGGATCGCTTGAGCCCAGGAGGTTGAGGCTGCAGTGCACCATGATCATGCCACTGCACTCCAGCCTGGGTGACAGAGCAAGACCCTGTTCCTTCATTTCACACCCCTCCCGCAAAAAGAAGGGGATAACTTGGGTGTCTAACAGGAAACCCAGTCTCCCGTCTCGCCAGCTGCCCCCTCCCAAGACCTCGGTAAGGAAGGAAGGCTCTGCCGCCCTCACATCTGCTGGCGTCTCACTTGCCTCCCCTCTCCCTGACATCCAGGAGGGACTGGATACTGCTTGCTACCCCTATTCGTACCTGATCCCTTTATCCATGCTCTTTGCTGCAAGCGCTGGGAGGCAACGCTTATAAAGACTGAGCGCCCTCTGGCGGCCTGAGGGCATTTTCCTCCAGATTCCTCCTTCCCCAACCCCACCAGAATGGGGGTAGTGGGCAGGTCCAACTTCGTGGGTAGCAACCTGTGCAGTGCCACGGGGTCCTTGTTCTTGGTTAATGCTCTGCTGCTGCCACCTTGAATTTTCTTTCCCATGGCAGGCTTTCTGGTAAAATCCAAAAAACCTGCTAGACAAACTAAAAGAGCTATAACACTCCACCTTGAAATTCTTAATAATATTTGAACAAGGAGCCTATATTTTCATTTTACACTCTAGCCCACAAATTATGAAGCCCATCTTGAGGGCAGCACGTCCTTCTGGAGAGAAGCGTATAAGTAGTCCCTACTCTTTGGTGGTGTTGGCAGGAGGGATGGACAAAACAAGATAGCTCACCTGGGTCTGGCACAGGGGGACAGAGAGAAGACGATGCCTGGTGGTGTGCTGGGAGCGTCAGTGGGCTTCCTGAAAGGGTGGGACACACGTCTGCTGGCGTCTCACTTGCCTCCTCTCTCCCCTCAGCAG
Seq C2 exon
GCCTGTCCACCTCATTCCCCATCGATGGCACCTTCTTCAACAGCTGGCTGGCACAGTCGGTGCAGATCACAGCAGAGAACATGGCCATGAGCGAGTGGCCACTGAACAATGGGCACCGCGAGGACCCTGCTCCAGGGCTGCTGTCAGAGGAACTGCTGCAGGACGAGGAGACACTGCTCAGCTTCATGCGGGACCCCTCGCTGCGACCTGGTGACCCTGCTAGGAAGGCCCGAGGCCGCACCCGCCTGCCTGCCAAGAAGAAACCACCACCACCACCACCGCAGGACGGGCCTGGTTCACGGACGACTCCAGACAAAGCCCCCAAGAAGACCTGGGGCCAGGATGCAGGCAGTGGCAAGGGGGGTCAAGGGCCACCTACCAGGAAGCCACCACGTCGGACATCTTCTCACTTGCCGTCCAGCCCTGCAGCCGGGGACTGTCCCATCCTAGCCACCCCTGAAAGCCCCCCGCCACTGGCCCCTGAGACCCCGGACGAGGCAGCCTCAGTAGCTGCTGACTCAGATGTCCAAGTGCCTGGCCCTGCAGCAAGCCCTAAGCCTTTGGGCCGGCTCCGGCCACCCCGCGAGAGCAAGGTAACCCGGAGATTGCCGGGTGCCAGGCCTGATGCTGGGATGGGACCACCTTCAGCTGTGGCTGAGAGGCCCAAGGTCAGCCTGCATTTTGACACTGAGACTGATGGCTACTTCTCTGATGGGGAGATGAGCGACTCAGATGTAGAGGCCGAGGACGGTGGGGTGCAGCGGGGTCCCCGGGAGGCAGGGGCAGAGGAGGTGGTCCGCATGGGCGTACTGGCCTCCTAACTCACCCCCTTCCCTGTCCCAGGCCCTGCCCTGGTCCCCCCACAAGGCCTCAGCCCAGTCACAACTGCCATTTCCAGTCTCTGCTGAGTGTCCCAGACCCTCGAGGCTGCCACTCCGTCGTGGTTTTATTTTTAATATAGAGAGAGTTTTGAATTCTACACTGTTGTCTTTCCTCTGTGCTGGCCTAGGACATTAGGATTCCTTCCACGGCTCCGGCCGCTAGGACCCTGCCAGGTCCCGCGCACCATCCCTGCCCTGCCCACGTGGTATTGCTGGGCTCCTGGCTAGATGCAAGCAAGGTGGACAAGAGCTCAGGACTCCAGCCCACTGCCACTGGGTGACACAGACTGTCGTTTGGGCATTATTTCATGGCAGATGGGCCAGTCCAGGGCCTACCCCGCCTTGCCCCCAGATCCCACTGGGGTCCATTTGGGGGGTCCTGCTACACTCCACCGATCCCCAAGGAAGTATAATAAACGATACCCAGCCAGAGTCTACTCACTGTCACAAGCACAACGAGTTTATATGAGAAAGCACTGAGGGGGTGCAGAGGGCCCGCTAGTTCCAGGGGAACTGAAAGCTGTTCCTGATCAGCCCGTATCATCTGAGGCCTGCCTGCCCACCCTGCCACCCTCCCCTCCCTTGCTGCTCTGCCCCTGCCAGTGCCCAGCCCAGCGGCTCTGGGAAGGGGTTCCCAGAATCCCTCCTGAGCTGTGCCATTTACTCAGGGGACTCCCAAACAGCCAGCTGCCAGTGCAGGTGGAGGGCTGTAGGGGAGGGCCAGTGCCCAGACAGGGTCATGGGGCTCAGACCAGCCCACTGTAGAGAATCACTCTGAGGCTCCAACTTCCTTCCTTCCTTCGGGGCCAGTCTCGGCCGAAGTCTGGTCACGCTCAGACAGAGCTGACCAGACCAGACCGTTTGCCTTTTCAAGTTTCCTAGTCCTGCTACAAGATGAGCTTCTTCCGTGGTTTCCTTTTGGAAACTCCTCCTTCCAACAAGCAGTGGGATCCCGGGGCCCAGGGCGGGCCGGTGTTGGCCGCTGGGGCTGTTGTAAGTCTTGCTGGATGTTCCCCTGTTCCTGAGCCTTAACCCCTCGCACAGCCATCCCCCCCCCCGTCCTGCCATCCCCCCCCGCCGTCCTGCCTTCCCCACCCCACCCTTAGGTCCCAGGTAGTTGCTCTGAAGAGTTTCAGTAGAGTGGCCCCAGGGTGATAGCTCAGGGAACAACAAAAAAGGAATTCCGTGAAAACATTTTTTTTTCTTTGATGAATTACTCCTGGGTCACTTCCACCACTGGTAAAGCCAGAACTTCTCCAAAAAGAACCTTGCAAAAAGTCCAGTGAATCAGTCGAATCATTCTGTGGATGCCAAAGAATATTTTGACCATAATACAGCACAGCCTGGACCTGACAACTTGTCATTTGGACTTTTTTTTAAATGGAGTTCTTTAGCAACAAAGTATAGAAACATGTTCATTGCACACACCCAAGGAGAAGAGCTCAAGCGCTTGGAAGAGGATGCTTTGCTGCTGCTGAAGTGTACCTGGGTGTTAGATTTCAGATCCTGGGCTGAGCCCACTGTGAGCTTTCCTAAACTGTGAGACTCACAGAGGGGAAAGATACTGACGGTGAAACCAGCATGGAAAACGTCTTTACCATGTGGTTCCCTCCTCCCCAAATACATAAAGCAAATAAGCAGGATGGGGAACAGCTTGACCTTCATCCACCCCTAACTCCAAAACTATCAAGGTACGACAGTGGCATTGTCATCGACACTCAATTTCATGTGAATTTTAGCAAAACAGGAAACAAAGATAATGACTCAGTTCAGAGGATCGGACAAATGTGTCTAGTCCGGGTGGACTCGGAGGGAGTGGGGTGGGCTTCAAGGATTCTGGGCGTTGGGATGGCATGAGCTACCCTGTAGAGTTTAGTCTGCCTGCCCGCCTTGGTAGTAGTGACCAGTCAGTGTCAGCATCAGTGTCCCAACCCCAGTCTCTGTTTACTGCCTTTGAACAGAACTTCTTCCTTCCCCATGCTTTGGGTCACCTCGGGCTGCAACCCTGTCTGTGCCAGATTGCCCGGTCTGACCCTGCAGGAAGCAAAGAGGTGAGCTTAAAGAACAACCAAACTCTGCCAGGGGTCCCAGAAAGCCCAGGGTCCAGCAGTCTCAGCACTTGGCCCCTTGCCCCTTCACACCATCCTGGGGCAGGGGCTGGGCCTCCCTGGTGGCAGGGGTGGGTGGAGAATTAGGGAGAGGGTGCAACGAGTCTGGCCCCTTGCCTCGGGCTGGCTGGTGTTCTTCCAAGAGCCTCTGCTCACATTGTTGGCCTCTGGATTCTGGCCCTTCTTCATTGGCTGTTGCTTTGGACTGGACTGTTGCTGAGCCTGTGTCCTGCAGAACCCAGATGTCTGTTAGGCTGGCTGGCTGCTGCGAGGGGAGGGGGGTGGCCTTTCATTTGGGGTGCCCTTTCACTCCCAGGCCAAGCCCTGGAGCAATCTTCTTCAGGCAGCTGTCTCCACCTCCAGGATGTCCAGCAGGCTGCAAGGAGAAGGATGCCAGCCACCCATCCTCCCCCAGTTCCCAGCCTTTCCCCTGTTGGTCACAGCCGCTTCTGTCTTTTTCCGGTCTACTGTCCCCAGTGTAGAGGGCTTTGCTGTCCCTGAGACTGAGGCAGGTTCCTTTTCCAGGTCAGAGGTGGAGGTAGATCTTTCTCTCAACCACATCTGCCTCCACACACAGCTCCTCCGCAGGGAAGGAGAAGCTGCTCTGTAACTCATTCTGGCTATCGTCCCCCTTCTCACTGACCTGACCGCCCACCACCTCCTTCCCCCTCATCACATGACAAAGGATAATGTGCAAGAAAAGTATTTTTATGTATCATAAATGTATTTTGAAACAAATGAGAAGAAGAAAGGTAGAAGGGTTTATTTTATTAAATGAGCCTGACTTAGTGACAGTGTGTGAGCATTTGCAATGTAAGGGCCTCAGCTTCCTTGGAGAAGCCACCCCAGGTTTCCAGACATAGATGTTGAATTGTTTGTGGGGGGTGTGCCAGGCCACGTCTCGTGTGTCCGTATGCAGGCATGCCTGTGTATACTGTGTATGGGCACACTGGGACTAGCTGGGACAATTCCTAGAGATTCAACTGCCCAATTCTAACCAACATTGGCAGCGGCTGAACTTGGCATTTCCTTGCTAACTGCCAGATGTGGCCAACCTTTGTCCATATGCAAACCACTGAAAAATGATCTGGATTTCTATAGCAAGGCCCTTGGGGAGGGCACTCTCCCATGCCCTTGGCCTCGCTGGCCACATTGGCCAATGAGCCAGGGCTGGAGTCTGAGACCTTTGGTTGTTCTTTAAGGCACCTCCTGCCACTTTCTCCCTCAGAGGCACAAACACTTTGTGTTCCACGTCAGTTTGAGGGGACGGTGGGGGGATGATATGAATGTCACAGGAGGAGACACCTTCTGTCTTTGTTTCAAAGAAAGTGATGTGCCATTTGTTAATATACAAGAGAAATATTGAAAATATATTGAAAAGAGCAATTTTAAATTATTTTTGGCTTATGTTGCAATATTTATTTTCTTGTATTAGAAAAGATTCCTTTGTAGAGAAAAAATGTATTTTTCATTAACGCAAAGACCTATTTCTCCTTTTTGTACATTGTCCATGTGCGCAACCCTTAACGAGCAATAGAATGTATGGTCACCTGGGTGTGGCCAGTGCCCGCTGTGCCCTGCATGATTCTGTGTTGCCGCTGCTGCATAGTTCCCAGCCCCATCCTGTCCTGCTCACTCATGGGGGCTTCCAGACCCCGGCCCCACCAGGGCTTGTGTCATAGGGAGCCCTTTGCACTCCTCGTGTGTTGGCAAACGCAGTTAATAAAGCAGTGTTTTCTGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000043143-PHF15:NM_015288:10
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=NA C2=0.901
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)