GgaINT0017581 @ galGal3
Intron Retention
Gene
ENSGALG00000006424 | PHF15
Description
NA
Coordinates
chr13:16187941-16189950:-
Coord C1 exon
chr13:16189822-16189950
Coord A exon
chr13:16188231-16189821
Coord C2 exon
chr13:16187941-16188230
Length
1591 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
ATTCTCCACTTTTGTTTTCCCAG
3' ss Score
-8.48
Exon sequences
Seq C1 exon
AACAAACTGGGAAGAAGACAAAGGGTAAGAAAAGTGATCCGAGAAGGAAAGGAAGAGATGGTAGAAAAAATAGCCCTGAGAAGAAAGAAAAAAGGAAATCAGTCAACGAAACTGTGTTGGGACAACTGG
Seq A exon
GTAAGTCTGATTTTATGGGCACAAGAGCTTCTCGTGGGCTGGCAGCTCTCCGGAGGCTCCTGCTTTTGGGGAGCGGCGTTGAGGAGCAGTGCGGTGCAGCCCCCAGCCCATCCCATGTGGGATCAGCCCCAGCATGCCACGGCCACAGTGCTGCAGCAGAGACCTCACCCTGCTGGGTTCAGGCTGTAAAACAGCCTCGGGGTTGCACGGTGTGCAAGAAAAGCTGCAATTGCACTCGGTGATAAAATCAGACTTACCCACTTCAAAGCAGGGCGGATCCTGTACATCTTCTGTGCCATTTTGCTTGCATGTACCTCCAGCACCATCAGTGCTGTTCCAGCAGATGCTTCTCCCACCTCTTGCTCTGCTCTATCAGCTGCGACCCCACCAGCAGAGCAGGGGGAGTTTTCTGGGGCAAACTCTGTCCTATTGAACGGGGGCCTACAGGGTTGTGGAAAGAAGCTGTCCTTCAGTCAGTCTGGAAAACCAGGCAGCAGAGAAGAGGAGCGAGGTCTTGCAAAGCTTCACCAGGGTCTTGCAGTGTGCTGGATTTTACAAAGAGCTTGAGGCATTGCTTGGGGCAGCTGTGATGGGGAGGAGCCTTGGGGTGCACTGAGCTGATCATCCCTGTGCTCCCTGCCCTGCCCTGCAGCACCAGCAGAACTGTTCTGCAGAAGAACCACAGGGGCACATGGGGACTTCCTCTTGGGGTGACGGTCCCCAGGCTGGGCTCACTGCAGCTTCATACTAGCGGTTAACCCCTGGGGTGCTTACCCACGCGGAAAGGTGGCACTGGGTCATGCACCATGGAGGGGGAGGGGGGATGTGTTTGCCGTGCTGTGAGTCAGAGCACCACTGCGCTGCTGCTTTGGCAGGCAAACACTCACAGCAAAAGTCAGATCTCATCTTTCCCCCAGCCCTGAAGGAAGCTGTGATGTCGGACCGATGGGTTTCTGTTGCAGGGATTGAAGCTGGTTCTGCCTGTGTGCCTTTGGCATTGCTTCTTGGTCTGCTGATTGGGCACGTCCCAGCCCATCATGCTCACTCTTGCTCTCAGACAGAATTATTAGGATGCTTTTCAGCTTTTTCCATTCCAGCCTGTCATCTCTGCTGCCGCTCTTTGATTCTCATGCTTCCAAGTGCTCAGAGAGAGCTTCCAGTCCCTCCTCCCATCTCACCCAATCCATGCTGTGTTAGGGTTCACTGCCCGTTCAAGAGTGTGCTGGGAGCTGAGTTAGCGCAGCGCTGCGGGCAGTGGGGCAGCAGTGGGGGTCAGCCAGGACGTGCCTCCGGGCAGGACTGTGCAACAGCTCTTCAGCAGGGGATGCTGAGCCCTCCTTGTCCTGCCGCCCCTGCACTATGCTGTGGTTCCGGGCTGCAGGAAGATGCTCTGCTCAGATCTGTATGTGCCGTGACCCCACAGTCAGATTCACTACTGCAACAAACCCTCTTCTGGTTCCCCATGTGGCATGCTGAGCTTTGCCATTTTGAGTTGATCCAGTGTCAGGGAGTTTTGCTGAGCACTGTGTGTTCTTGGTCAAAGGGAAGAGCTGCTTCTGGTTCCTGAGCCAATTCTCCACTTTTGTTTTCC
Seq C2 exon
CAGGCTTGTCGACTTCCTTCCCCATCGATGGGACCTTCTTCAACAGCTGGCTGGCGCAGTCGGTGCAGATCACGGCCGAGAACATGGCCATGAGCGAGTGGTCCCTGAACAACGCGCACCACGAGGACAGCACGCCCGGCCTGTCCGAGGAGCTGCTCCAGGACGAGGAGACGCTGCTCAGCTTCATGATGGACCACTCCCTGAGGTCCCCCTTCAAACAGAGCGAGGCCGCCAAGAAAGTGAAAAGCAAAACAAGAACGAACACTAAGAAAAAGCCGCCCCGGAGCGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006424:ENSGALT00000010368:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.841 A=NA C2=0.680
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGGAAGAAGACAAAGGGT
R:
CGCTCTGTTTGAAGGGGGAC
Band lengths:
349-1940
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]