HsaALTA0006237-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000043143 | PHF15
Description
PHD finger protein 15 [Source:HGNC Symbol;Acc:22984]
Coordinates
chr5:133912458-133914287:+
Coord C1 exon
chr5:133912458-133912586
Coord A exon
chr5:133914184-133914186
Coord C2 exon
chr5:133914187-133914287
Length
3 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TGCCTCCTCTCTCCCCTCAGCAG
3' ss Score
9.89
Exon sequences
Seq C1 exon
AGCGGTCTGGGAGGAGAGCAAAGGGCAAGAAGAGTGACTCGAAGAGGAAGGGCTGCGAGGGCTCCAAGGGCAGCACTGAGAAGAAAGAGAAAGTGAAGGCGGGGCCTGACTCAGTCCTGGGGCAGCTGG
Seq A exon
CAG
Seq C2 exon
GCCTGTCCACCTCATTCCCCATCGATGGCACCTTCTTCAACAGCTGGCTGGCACAGTCGGTGCAGATCACAGCAGAGAACATGGCCATGAGCGAGTGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000043143-26-27,26-26-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.841 A=NA C2=0.901
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAGAAAGTGAAGGCGGGG
R:
CAGCTGTTGAAGAAGGTGCCA
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)