HsaALTA0006257-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000173868 | PHOSPHO1
Description
phosphoethanolamine/phosphocholine phosphatase [Source:HGNC Symbol;Acc:HGNC:16815]
Coordinates
chr17:49224904-49226758:-
Coord C1 exon
chr17:49226647-49226758
Coord A exon
chr17:49225005-49225131
Coord C2 exon
chr17:49224904-49225004
Length
127 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
CAGACTTGGGTCCTCCTCAGGTG
3' ss Score
6.17
Exon sequences
Seq C1 exon
GAACGTGTGACGACGGCTGGAGGCCAACAGAGTCCCTACAGGTGGTGCTCACGGTAATGCACCGACAATGAGTGGCTGTTTTCCAGTTTCTGGCCTCCGCTGCCTATCTAGG
Seq A exon
GTGTTGGATGTGCCAGCGCCTCTGGCCGTGGCCCGCTAACCAGCCTCTCCCGGGCGGGCTCCTGCCGCGCCCCCTCTCGCTTGCCCCCTCCTCCTCCTCCTCCTGCTGCTCTCCCCCCTGCTCCCAG
Seq C2 exon
GACGGCAGGATGGCCGCGCAGGGCGCGCCGCGCTTCCTCCTGACCTTCGACTTCGACGAGACTATCGTGGACGAAAACAGCGACGATTCGATCGTGCGCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173868-6-12,6-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF068887=Put_Phosphatase=WD(100=94.1)
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGTGTGACGACGGCTG
R:
CGAATCGTCGCTGTTTTCGTC
Band lengths:
202-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development