HsaINT1026847 @ hg38
Intron Retention
Gene
ENSG00000173868 | PHOSPHO1
Description
phosphoethanolamine/phosphocholine phosphatase [Source:HGNC Symbol;Acc:HGNC:16815]
Coordinates
chr17:49223362-49226758:-
Coord C1 exon
chr17:49226647-49226758
Coord A exon
chr17:49225005-49226646
Coord C2 exon
chr17:49223362-49225004
Length
1642 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
GCTCTCCCCCCTGCTCCCAGGAC
3' ss Score
9.57
Exon sequences
Seq C1 exon
GAACGTGTGACGACGGCTGGAGGCCAACAGAGTCCCTACAGGTGGTGCTCACGGTAATGCACCGACAATGAGTGGCTGTTTTCCAGTTTCTGGCCTCCGCTGCCTATCTAGG
Seq A exon
GTAAGTGGGTCCCTCCAGGGGTCTCCTAGGATGAGGCCTCAGCCCCCAGTTTCCCATCACCTTTCCATAGGGCCTTGGGAGAGGCCCTATCCAGCCCGTTTTAGGTTTACCCTCACCTCTACTGGGGCTTCATTAATTCCTAGAAGCTTCCATCCCAGGTGTGGGGTCCTGATGCTTTATATCTGCAATTTGAAGGATCCTGGGCCACTGAAATGCCCACTGGATGTTGATGAGACCAGAGGGTGACTCTAGGGATGAGGTGGAAGGGACAGCTTGGTTAGGGAGGCAGATAGCCAATCGAAATCCCAGCTCCGAAATGAGGAGCTTGGGTTTCTGTTTCACAAGGTGTGCCAGGCCATAAGCACACCAGGAATATGAGAGAGGGGCTTAGGAAGAAACCAGAAAGAGAAACAATCCCATCTCAATTAACTGGGGTGGGAGCTGGGCGGGAGAAAAGCAGTGTGTGGGTATCTGGAAGCTGCATGTCACCTGCTCACTGCCCCTCTGCGCCTCTCACACACTGGCAGGCAAAGGTGATGGAAACTTGCTGCCAAGGGCTCTTGCTGCCTCCATTGCTTGCCTTTCCTTGTGCCCAGACATGTCCCCTCTTGTCCTCTGTCCTCTCCCATGCTGCCTACCACCCTCCCCTCCAACAAGAATCTGGCCCAAGGTCTCCGCTTCCTGGAACTCCCTTATCCCTACCCCTACTCTGTCTTCCTGTCCAGCAGTCTGTCTCCAAGATCCCCTAGAATGACCTCCTCTCAGCCCTCTCCTCCACACCCCCCAAGTCCCCACTACCTGGCCCCTCCCACTCCTCTGCCTTTTCAGCCACTGCTGCTCTCTTCTCTTCTCCCTTACCTGTCTCCCAGGTGTGTCATGGCCTGGTGCGGGAGGCTCTTACCTCCCCAAGCCCCACTGCTTCTCCTGCTGCCCGCTTGCTTCGGACTCTGGCAGAAACCCCACCTGCTGACACGTTCCTCCTGGGGAATTGGCAAGTGATTAGTGATGAGCTGTCAGCACAGGGCCCTAAAACTCCCCGAAGAAGCTGTGCCCCATCCCTAGACCCCTGTTCAGTGCCATTGGGCTAGAAGCAGCTCCCAGAGAGCCATAGATTCCCCATGGCCCAAAAGGAGAATGAGGAAACTGGTCCAGTTGGGTGGATGGGTGGTTGGTTTCCCTTGACTCTACCTCAGGGAATGAGGGAGGGGAGAGTTCCCACCACCCTTTCTTGATCCACACCAACAACAGGGGCCACTGGAAGTCTCCAAAACAGTCCAGTCCAGAAACCTCCCCAAAGTGGTGATCCTTGGAAGCTGCTCTTCCCTTCTTTTGACCCTTGTTAAGCCCCATTGGCCCTCGATGAGAGTAGGGGAAACAGGTGCCGAGAAGCCCTCTGGGCATAAACCCCACTGCAGTTAACTAAGAGGTGCCACTGGAGTAGTCAGGGAAGGCTGGGGATAGAGGTGGTGGCATTGGGTACTCCTCCCAGCTTAACCAGACTTGGGTCCTCCTCAGGTGTTGGATGTGCCAGCGCCTCTGGCCGTGGCCCGCTAACCAGCCTCTCCCGGGCGGGCTCCTGCCGCGCCCCCTCTCGCTTGCCCCCTCCTCCTCCTCCTCCTGCTGCTCTCCCCCCTGCTCCCAG
Seq C2 exon
GACGGCAGGATGGCCGCGCAGGGCGCGCCGCGCTTCCTCCTGACCTTCGACTTCGACGAGACTATCGTGGACGAAAACAGCGACGATTCGATCGTGCGCGCCGCGCCGGGCCAGCGGCTCCCGGAGAGCCTGCGAGCCACCTACCGCGAGGGCTTCTACAACGAGTACATGCAGCGCGTCTTCAAGTACCTGGGCGAGCAGGGCGTGCGGCCGCGGGACCTGAGCGCCATCTACGAAGCCATCCCTTTGTCGCCAGGCATGAGCGACCTGCTGCAGTTTGTGGCAAAACAGGGCGCCTGCTTCGAGGTGATTCTCATCTCCGATGCCAACACCTTTGGCGTGGAGAGCTCGCTGCGCGCCGCCGGCCACCACAGCCTGTTCCGCCGCATCCTCAGCAACCCGTCGGGGCCGGATGCGCGGGGACTGCTGGCTCTGCGGCCGTTCCACACACACAGCTGCGCGCGCTGCCCCGCCAACATGTGCAAGCACAAGGTGCTCAGCGACTACCTGCGCGAGCGGGCCCACGACGGCGTGCACTTCGAGCGCCTCTTCTACGTGGGCGACGGCGCCAACGACTTCTGCCCCATGGGGCTGCTGGCGGGCGGCGACGTGGCCTTCCCGCGCCGCGGCTACCCCATGCACCGCCTCATTCAGGAGGCCCAGAAGGCCGAGCCCAGCTCGTTCCGCGCCAGCGTGGTGCCCTGGGAAACGGCTGCAGATGTGCGCCTCCACCTGCAACAGGTGCTGAAGTCGTGCTGAGTCTGGCCGCCTGCAGGGGGGTACCCGGGCCAACGGCGGAGGGGGCGGGGAAGGGAGATTCGGCAAAGACAGCTTTACTACTCCCTTTTCCCTTTGGCTTTGTTATGTCCCTCTGGGAATTTCTGGAATCTCGTATTTGGGGGCTTGGGGAAGGGGGCTCAGAGCCGTCCCTATCTATTCAGTTAACCCACCTCGGCTGCCTCCCCCACTCCACTGTGCACGGTTGAGTTCTGGAGTCTGACCCATCGCGGGGTGGCGCGCAAACCTTGGAAGGCAGCAGTATTTCCTGGTCCTCCCAACTGGGAGGAAGGGGCCCCCCCGGCAGGTGAGAGAAGGAACATCTCCCGCCGCTGTAACTTGTTGCCTCGGGCTGCGTGACCGCCCCTCCTCCAGTCTACTGTGGAGGGAACCCAGGATCCTGAAATTCTCCTGGCCGCAAGAACTCCCCACAGAGGCAGAAGAGGGTCTCCACCTATGGCCCCAGGCCTTTGCGATCTTGCTTCACCCACCGCGACCCCACACTATTTCTGTGCTGTCCACACTCTCTTGCCTCCCGACCCCCGCACTCCCTTCTAGCACCCCCAAAGGAAAAGCCAGAGGAACAATCGCCTCCTGGTGGTGGTACGAGGTAGCGCACCGTCCGGCTCGGGTCCGGACAGCCAGTAACCTCGCAGAGAGTGACGGTGTCTCCTTGCATCCCAGCCTCGTCTATGCAGCAAGAGACCAGGGACTTCACCAAAGTCACCCTCGCGGGCTGGGCCTTCCACGCATCCCCCCCACCCCCCATGGAACAGAAAGCCATGTTTTTAAGCAGAACCAGCGAAACCCAAGCCCCTCCTTCCTCTGGTGTTTTACAACTATAAAGGAGGTGAAGGGGGAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173868:ENST00000310544:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF068887=Put_Phosphatase=WD(100=94.1)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGACAATGAGTGGCTGTT
R:
GTTTTGCCACAAACTGCAGCA
Band lengths:
342-1984
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains