RnoINT0110698 @ rn6
Intron Retention
Gene
ENSRNOG00000005569 | Phospho1
Description
phosphoethanolamine/phosphocholine phosphatase 1 [Source:RGD Symbol;Acc:1306182]
Coordinates
chr10:83640369-83643859:+
Coord C1 exon
chr10:83640369-83640480
Coord A exon
chr10:83640481-83642187
Coord C2 exon
chr10:83642188-83643859
Length
1707 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
CAGCCTTGGGTCCTCCTCAGGTC
3' ss Score
6.93
Exon sequences
Seq C1 exon
GAGCTCTGGATGACAACTGGAGACCAACCAAGTTTCTAAAGGTGGAACTCAGGATAATACACTGACAATGAGTGGGTGCTTTCCGGTTGTTGGATTGCGATGCCTGTCTAGG
Seq A exon
GTAAGTGGTGCCCTTCAGGATGAGGCCTCAAGCCCCTACTTTTCCACCCTGGTGTAGGAGAAGATTTGCCCTCTCCACTGGAGCTTTATGAATCCCCTGAAAATTTCTCTGCTGTAGATAGATCCTAGTGTGGCATATAATAACAAGGCAAGTCAGAGATTCCTCAGGCTGGTGCCAAATCCCCAGGGTGACTCCTGCAGGGAGAACGTGGAGAAGACAGTCCTCTGGGGGAGACAGGTAGCCAGGCTCCAATACAAACTCTGAAGTGAGCTTGAACTTTTGTTTTACAAAGTTGTGCCAGGCCATCAGCGCCCCAGAGATAATAAGGGTAGGGGTGAGGTCTTGGGGATGTCGCTCGGTTGTTCTGTTAATGCCAGCACTGGGAAGGTGGACCGGGAGGTTCAGGAGTTCATCTTCATCCACACAGCAAGTTTGAGGTCAGCCTGAGCTATAGAGGACCCATTCTTTAAAAAGCAAGAAGCAGGTGTGTGGCGGAGAAACCAGGTTCTGTGTTGGATATTTCCTGCATGGGCTAGGTAGTGCATGCTGGGAGACAGAAAGGCAAGGTGTGTGATGCGTGTTCTAGGATTTACAGGATCTGTCTCTCTGCCCCTCTCCTATAGCTGCTGGCAAACAAAGGTGGCAGGGACACGCAGATGGGGGACCCCACTGTGTCCGTGTGCTCGCTTTTCTTTTGTGTCCCAGTCCTCCCATTGTATCCCCATCTCCCAAGCTGTTCCTCCTTTGCCAACTTCCCAAAAGATGACTCTGACCCAAAGTCTCACTACCTACAGCACCCCCACTGCGATCCAGCAGCCTACTCTACCCTCCCTGCCTGACTTCACCTCAGACATCCCCTCCCCTCACACCCTCTCACATAGCTGCCCACCCCTGCCTCCCTCTGCCCTTTTAGCCACTGCCGCTCTCTTCCCTCCCCCCCACCTGTCTCCCAGGTATGCCGTGGCCTGGTGAGAGGGGCTCCCACCACCTCCTTAAGCCCCATTGCTTCTCCTGCTGCCTGCTTGCTTCGGACTCTGGCAGAAACCCCACCTGCTGGCACGTGCTTCCCAGGGAATTGGCAAGTGATTAGCATAGGCAGAAGCACAGGGCCCCTCCCACAGCTCCAAAAGAGCCTCCCTGGGTCTTGTGTGGTCTGCATATCTGTAATTTCAAGGGCTAAAATCTAGTTCTCTGGCCAGGCAGGGGCACTTGGCTTCTAGGCCTGGCACTTCTTGATATCCAGGTCCAGGAAAGACCTGACACTCATCGACCACCTGCCTTGGTGATGCTAATGACTTCCGCTGGAGCCTGTCTCCTCCATTAATCCTTGATCCCACAAAGATCACAGGGAAAAGGAAACTGCTCCCAGCCCTGGGCACATGAATCTTCTGTCCACTCTGCTGTGTCAGAGCAAAGGATGTGGGTTTGCCTACTATTGTCTAAACACCAGCAGAAGTCTCCAACCAGTGGAGGAGTCTCAAGGAGTGACCCTTGATAAGTCATCCCTTCTCCCAAGTTGACCGTTGCTAAGCCCCCAGAGATCCTATGAGAGCAGCAGAAACTGAAGCCAAGGAAGCCTTTGGCTTCAAGACTAGCACGGCCCCTTTGCGTCGACCCCAGTACGATTGAGAGACAGGCAAGGGATGGCGGGATGTGGGTAACACATTGGTTCCATCTCCAGCTTAACCAGCCTTGGGTCCTCCTCAG
Seq C2 exon
GTCTTGGATGTGCCAGCGACCCTGGCTGTGGCCCGCTAATCAGCCTCTCCCTGGCCGGCTCCCGCCGCGCCGCCTCTCGCTTGCCCCCTCCTCCTGCTCCTCTTCCCCCTGCTCCCAGGACGGCAGGATGGCCGCGCCGGGCGCGCCTCGCTTCCTCCTGACCTTCGACTTCGATGAGACCATTGTGGATGAGAACAGCGACGACTCGATCGTGCGTGCTGCGCCAGGCCAGCAACTGCCCGAGAGCCTGCGTGCCACCTATCGGGAGGGCTACTACAATGAGTACATGCAACGCGTCTTCAAGTACCTGGGTGAGCAGGGAGTACGGCCCCGGGACCTGCGCGCTGTCTACGAGACCATCCCCCTGTCGCCAGGCATGGGCGATTTGTTGCAGTTCATAGCCAAACAGGGCTCCTGCTTCGAGGTTATTCTCATTTCGGATGCCAACACCTTCGGTGTGGAGAGTGCCCTGCGTGCCGCTGGCCACCACAGTTTATTCCGCCGCATCCTCAGCAACCCGTCGGGGCCCGATGCGCGGGGACTGCTGACGCTGCGGCCCTTCCACACGCACAGCTGCTCGCGCTGCCCCGCCAACATGTGCAAGCACAAGGTGCTCAGCGAATACCTGCGTGAGCGGGCCCGCGACGGCGTGCACTTCGAGCGCCTCTTCTATGTGGGTGATGGTGCAAATGACTTCTGCCCCATGGGGCTGCTAGCGGGCGGGGATGTAGCCTTCCCACGCCGCGGCTACCCCATGCACCGCCTCATCCAAGAGGCACAGAAGGCTGAGCCCAGTTCCTTCCGCGCCCACGTGGTGCCCTGGGAAACGGCCGCCGACGTGCGCCAACATCTGCAACAGGTGCTGAAGATGTGCTGAAGACCATCGCCTGCAAGGGGTGCCCGGGACAACCAGCGGAGGAGGGGCGGGACTGGGAATTGGTTAGGACCACCTAGTTTTACTACCCTCCCTCTTTCCTTTCCGCTTTGCTGTGCTCCTCTGGTCGGTTCTGAAATTCGGTCCGCTTGTGGCTGGGAGCTGGGGCTTCAGAGCCGTCCCTGTCTCTGCAGTTAACACAGCTCAGCTGCCTTCCCTCCAGGGAGGTGAGCACCCCTTGGAAGGCAGGCAGTGTCCCTCGAACTGAGAGGAACGGGCTCCTAGAAGTTGGGAGAAAAAACATCTCCCACTTACTTTAGCTGCTGCATAACCTCCTCTGCCCAGCCTTTCAAACGGACTCAGGATCCCCCAATCCGCATGCCAGCACCAGATTTCCTCGCGGCAGACCTATGATGCTCTCAGAAGACAACTCTAGGTCTCTCGGTCTTGCTTCAGCCAACGCAACCCTATACTGCCGCTGCGCTGGCTGCGCCTTGTTTCCTTCCCACCCCCCCACCTCACCCCCGCCAGACACACACACCCCCCCCCAAGGAAGAAAAAGCCAGAAGGAACAACCGCCTCTTGCTGGTGGAACGAGGTAAAGCCAACCAATGACCTCGGAGAGTGTGATGACAAATCCTCGCACTCCGGCAAGAGACCAGGGACTTCACCAAAGTCGTCCCCGCCTCATCCCCCTCCACCCCTATGGAACAGAAAGCCATGTTTTTAAGCAGAGCCAGGGAAACCCAAGCCCCTCCCCTCTCTGGAGTTTCAGACCAATAAAGGAGGTGAAGGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005569:ENSRNOT00000007352:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF068887=Put_Phosphatase=WD(100=82.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCCGGTTGTTGGATTGC
R:
CACCCAGGTACTTGAAGACGC
Band lengths:
349-2056
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]