HsaINT0124380 @ hg19
Intron Retention
Gene
ENSG00000173868 | PHOSPHO1
Description
phosphatase, orphan 1 [Source:HGNC Symbol;Acc:16815]
Coordinates
chr17:47300732-47304120:-
Coord C1 exon
chr17:47304009-47304120
Coord A exon
chr17:47302494-47304008
Coord C2 exon
chr17:47300732-47302493
Length
1515 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
CAGACTTGGGTCCTCCTCAGGTG
3' ss Score
6.17
Exon sequences
Seq C1 exon
GAACGTGTGACGACGGCTGGAGGCCAACAGAGTCCCTACAGGTGGTGCTCACGGTAATGCACCGACAATGAGTGGCTGTTTTCCAGTTTCTGGCCTCCGCTGCCTATCTAGG
Seq A exon
GTAAGTGGGTCCCTCCAGGGGTCTCCTAGGATGAGGCCTCAGCCCCCAGTTTCCCATCACCTTTCCATAGGGCCTTGGGAGAGGCCCTATCCAGCCCGTTTTAGGTTTACCCTCACCTCTACTGGGGCTTCATTAATTCCTAGAAGCTTCCATCCCAGGTGTGGGGTCCTGATGCTTTATATCTGCAATTTGAAGGATCCTGGGCCACTGAAATGCCCACTGGATGTTGATGAGACCAGAGGGTGACTCTAGGGATGAGGTGGAAGGGACAGCTTGGTTAGGGAGGCAGATAGCCAATCGAAATCCCAGCTCCGAAATGAGGAGCTTGGGTTTCTGTTTCACAAGGTGTGCCAGGCCATAAGCACACCAGGAATATGAGAGAGGGGCTTAGGAAGAAACCAGAAAGAGAAACAATCCCATCTCAATTAACTGGGGTGGGAGCTGGGCGGGAGAAAAGCAGTGTGTGGGTATCTGGAAGCTGCATGTCACCTGCTCACTGCCCCTCTGCGCCTCTCACACACTGGCAGGCAAAGGTGATGGAAACTTGCTGCCAAGGGCTCTTGCTGCCTCCATTGCTTGCCTTTCCTTGTGCCCAGACATGTCCCCTCTTGTCCTCTGTCCTCTCCCATGCTGCCTACCACCCTCCCCTCCAACAAGAATCTGGCCCAAGGTCTCCGCTTCCTGGAACTCCCTTATCCCTACCCCTACTCTGTCTTCCTGTCCAGCAGTCTGTCTCCAAGATCCCCTAGAATGACCTCCTCTCAGCCCTCTCCTCCACACCCCCCAAGTCCCCACTACCTGGCCCCTCCCACTCCTCTGCCTTTTCAGCCACTGCTGCTCTCTTCTCTTCTCCCTTACCTGTCTCCCAGGTGTGTCATGGCCTGGTGCGGGAGGCTCTTACCTCCCCAAGCCCCACTGCTTCTCCTGCTGCCCGCTTGCTTCGGACTCTGGCAGAAACCCCACCTGCTGACACGTTCCTCCTGGGGAATTGGCAAGTGATTAGTGATGAGCTGTCAGCACAGGGCCCTAAAACTCCCCGAAGAAGCTGTGCCCCATCCCTAGACCCCTGTTCAGTGCCATTGGGCTAGAAGCAGCTCCCAGAGAGCCATAGATTCCCCATGGCCCAAAAGGAGAATGAGGAAACTGGTCCAGTTGGGTGGATGGGTGGTTGGTTTCCCTTGACTCTACCTCAGGGAATGAGGGAGGGGAGAGTTCCCACCACCCTTTCTTGATCCACACCAACAACAGGGGCCACTGGAAGTCTCCAAAACAGTCCAGTCCAGAAACCTCCCCAAAGTGGTGATCCTTGGAAGCTGCTCTTCCCTTCTTTTGACCCTTGTTAAGCCCCATTGGCCCTCGATGAGAGTAGGGGAAACAGGTGCCGAGAAGCCCTCTGGGCATAAACCCCACTGCAGTTAACTAAGAGGTGCCACTGGAGTAGTCAGGGAAGGCTGGGGATAGAGGTGGTGGCATTGGGTACTCCTCCCAGCTTAACCAGACTTGGGTCCTCCTCAG
Seq C2 exon
GTGTTGGATGTGCCAGCGCCTCTGGCCGTGGCCCGCTAACCAGCCTCTCCCGGGCGGGCTCCTGCCGCGCCCCCTCTCGCTTGCCCCCTCCTCCTCCTCCTCCTGCTGCTCTCCCCCCTGCTCCCAGGACGGCAGGATGGCCGCGCAGGGCGCGCCGCGCTTCCTCCTGACCTTCGACTTCGACGAGACTATCGTGGACGAAAACAGCGACGATTCGATCGTGCGCGCCGCGCCGGGCCAGCGGCTCCCGGAGAGCCTGCGAGCCACCTACCGCGAGGGCTTCTACAACGAGTACATGCAGCGCGTCTTCAAGTACCTGGGCGAGCAGGGCGTGCGGCCGCGGGACCTGAGCGCCATCTACGAAGCCATCCCTTTGTCGCCAGGCATGAGCGACCTGCTGCAGTTTGTGGCAAAACAGGGCGCCTGCTTCGAGGTGATTCTCATCTCCGATGCCAACACCTTTGGCGTGGAGAGCTCGCTGCGCGCCGCCGGCCACCACAGCCTGTTCCGCCGCATCCTCAGCAACCCGTCGGGGCCGGATGCGCGGGGACTGCTGGCTCTGCGGCCGTTCCACACACACAGCTGCGCGCGCTGCCCCGCCAACATGTGCAAGCACAAGGTGCTCAGCGACTACCTGCGCGAGCGGGCCCACGACGGCGTGCACTTCGAGCGCCTCTTCTACGTGGGCGACGGCGCCAACGACTTCTGCCCCATGGGGCTGCTGGCGGGCGGCGACGTGGCCTTCCCGCGCCGCGGCTACCCCATGCACCGCCTCATTCAGGAGGCCCAGAAGGCCGAGCCCAGCTCGTTCCGCGCCAGCGTGGTGCCCTGGGAAACGGCTGCAGATGTGCGCCTCCACCTGCAACAGGTGCTGAAGTCGTGCTGAGTCTGGCCGCCTGCAGGGGGGTACCCGGGCCAACGGCGGAGGGGGCGGGGAAGGGAGATTCGGCAAAGACAGCTTTACTACTCCCTTTTCCCTTTGGCTTTGTTATGTCCCTCTGGGAATTTCTGGAATCTCGTATTTGGGGGCTTGGGGAAGGGGGCTCAGAGCCGTCCCTATCTATTCAGTTAACCCACCTCGGCTGCCTCCCCCACTCCACTGTGCACGGTTGAGTTCTGGAGTCTGACCCATCGCGGGGTGGCGCGCAAACCTTGGAAGGCAGCAGTATTTCCTGGTCCTCCCAACTGGGAGGAAGGGGCCCCCCCGGCAGGTGAGAGAAGGAACATCTCCCGCCGCTGTAACTTGTTGCCTCGGGCTGCGTGACCGCCCCTCCTCCAGTCTACTGTGGAGGGAACCCAGGATCCTGAAATTCTCCTGGCCGCAAGAACTCCCCACAGAGGCAGAAGAGGGTCTCCACCTATGGCCCCAGGCCTTTGCGATCTTGCTTCACCCACCGCGACCCCACACTATTTCTGTGCTGTCCACACTCTCTTGCCTCCCGACCCCCGCACTCCCTTCTAGCACCCCCAAAGGAAAAGCCAGAGGAACAATCGCCTCCTGGTGGTGGTACGAGGTAGCGCACCGTCCGGCTCGGGTCCGGACAGCCAGTAACCTCGCAGAGAGTGACGGTGTCTCCTTGCATCCCAGCCTCGTCTATGCAGCAAGAGACCAGGGACTTCACCAAAGTCACCCTCGCGGGCTGGGCCTTCCACGCATCCCCCCCACCCCCCATGGAACAGAAAGCCATGTTTTTAAGCAGAACCAGCGAAACCCAAGCCCCTCCTTCCTCTGGTGTTTTACAACTATAAAGGAGGTGAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173868-PHOSPHO1:NM_001143804:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.108
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF068887=Put_Phosphatase=WD(100=81.2)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGACAATGAGTGGCTGTT
R:
GCGCTGCATGTACTCGTTGTA
Band lengths:
357-1872
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)