MmuINT1026631 @ mm10
Intron Retention
Gene
ENSMUSG00000050860 | Phospho1
Description
phosphatase, orphan 1 [Source:MGI Symbol;Acc:MGI:2447348]
Coordinates
chr11:95828666-95832140:+
Coord C1 exon
chr11:95828666-95828775
Coord A exon
chr11:95828776-95830550
Coord C2 exon
chr11:95830551-95832140
Length
1775 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
CCTCTTCCCCCTGCTCCCAGGAC
3' ss Score
10.82
Exon sequences
Seq C1 exon
GAGCTCTGGATGACAGCTGGAGACCAACAGTTTCTAAAGGTGGTGGTTAAGATAATATACTGACAATGAGCGGGTGTTTTCCAGCTGTTGGACTACGATGCCTATCTAGG
Seq A exon
GTAAGTGGAGCCCTTCAGAATGAGGCCTTAAGCCCCTACTTTTCCACCCTGGGATAGGAGGAGCCCTCTTCAGCCCCCTTCAGATTTGTCCTCTCCACTGGAGCTCTATGGATCCCTGAAAATTTTCTCTTCTGTGGATCCTGGTGTCTCATATAACAGGGATCCAAGCCAGAGATTCCACAGGCTGGTAAAACCCCAGGGGTGACTCCTGGAGGGATAAAGTGGAGAAGACAGTTCTCTGAGGGAGAGAGGTGGCCAAGCTCCAATACCAACTCTGAAATGAGGTGTGCCAGGCCCAGAAGTAATAAGAGTGGGTGAGGCTTAGGATGCTGTCACTTGGTTGGTAGAACTCTGTTAATGCCAGCCCTAAGAAGGTGAACCAGGAGGCTCAGGAATTCGAGTTCATGCTTATCTACAAAGCACGCCTGAGGTCAGCCTGAGCTATAGGGAACCCCTTCTTTAAAAAGAAAGAAAGAAGTTGGGGTGTGTGGATGTGTGGTGGGAAACCAGGTTCTGTTTTGGTCTTTACCGCACTGGGTGGGAAGTGCATGCAGGAAGGTAGAAAGGCAAGCCAAGGGAGGGATATTCTAGGACAGGATCTCTCTGTCTCCCTCCTTATAGCTGCTGGCAAACAAAGGTGACAGGGACATGCTTAAGTTGGGTGGCTTACCTGCTGTGTCCGCATGCTTGCTTTTCATTGTGCCCCAATACTCACTCCCTTTGCATCCCCAGCTGTTTTCCCTTTGCCAACTTCCCAAAAGATGACTGACCCAAAGTCTCATGACTACCTAGAGCTCCCACTATGTTCCAGGAGCCTACTCTATCCTCCCTGCCTGACTTCATCCCAGACACCCTCTCCCTAACACCCCCTCACATAGCTGCCCACCCCTGCCTCCCTCTGCCTTTTTAGCCACTGCCGCTCTCTCTCCCCTCCCCTACCTGTCTCCCAGGTATGCCGTGGCCTGGTGAGGGGGGCTCCCACCTCCTTAAGCCCCATTGCTTCTCCTGTTGCCTGCTTGCTTCGGACTCTGGCAGAAACCCCACCTGCTGGCACGTGCTTCCCAGGGAATTGGCAAGTGATTAGCATGGGCAGCACATTAGCACAGGGCCCAGCAGCTCCCAAAGAGACTCCCAGGGTCTTGTGTGGTTTGCATACCTACCTGGTAATTTCAAGGGCTAAAACCTAGCTCTCTGGCCAGGCCCAGGGAGGCTCAGGAACTTGGCTTTCCAGGCCTGGCACTTATTGGCATCCAGGCCCAGGAAAGACCTGAGACTCATTGCCCACCCGGCCTTGGTGATGTCAATGGCTTTTCCAGGAGCCTGGCTCCTCCATTTATTCTTGATCCCAGGGGGATCACGGGAAAAGGAGGCTGCTCCCCCTGGGTACATGAATCTGCTGTCTACTCTGCTCTGACACCAGAAACCTCCAACCCAGTTGAGGAGTCTCAAGGAGTGATCCTTGACGAGTCATCCCCTCTCTTAAGGGATCCTATGAGAGCAGCAGAAACCGAAGCCAAGGAAGCTTTTGGCTTCAAGACTAGTATGGCCCCCTTGCGTCGACCCCAGCACGATTAACTGAGAGACAGGCAAGGGACGGCGGGGTGTGGGCAGCACATTGGTTCCATCTCCTGCTTAACCAGCCTTGGGTCCTCCTCAGGTCTTGGATGTGCCAGCGACCCTGGCTGTGGCCCGCTAATCAGCTTCTCCCTGGCCGGCTCCCGCCGCGCCGCCTCTCGCTTGCCTCCTCCTCCTGCTCCTCTTCCCCCTGCTCCCAG
Seq C2 exon
GACGGCAGGATGGCTGCGCCGGGCGCGCCTCGCTTCCTCCTCACCTTCGACTTCGATGAGACCATCGTGGACGAGAACAGCGACGACTCGATCGTGCGTGCCGCGCCAGGCCAGCAACTGCCCGAGAGCCTGCGTGCCACCTATCGCGAGGGCTACTACAATGAGTACATGCAACGAGTCTTTAAGTACCTGGGTGAGCAGGGTGTACGGCCCCGGGACCTGCGCGCTGTCTACGAGACCATCCCCCTGTCGCCAGGCATGGGCGATTTGTTGCAGTTCATAGCCAAACAGGGCTCCTGCTTCGAGGTTATTCTCATTTCGGATGCCAACACCTTCGGTGTGGAGAGTGCCCTGCGTGCCGCTGGCCACCACAGTTTATTCCGCCGCATCCTCAGCAACCCGTCGGGGCCCGACGCGCGGGGACTGCTGACGCTGCGGCCCTTCCACACGCACAGCTGCTCGCGCTGCCCGGCCAACATGTGCAAGCACAAGGTGCTCAGCGAATACCTGCGTGAGCGGGCCCGCGACGGCGTGCACTTCGAGCGCCTCTTCTACGTGGGTGATGGTGCAAATGACTTTTGCCCCATGGGGCTGCTGGCGGGCGGGGACGTGGCCTTCCCGCGCCGCGGCTACCCCATGCACCGCCTCATCCAGGAGGCACAGAAAGCTGAGCCCAGCTCCTTCCGCGCCCACGTGGTGCCCTGGGAAACAGCCGCCGATGTGCGCCAACATCTGCAACAGGTGCTGAAGATGTGTTGAAGACCATCGCCTGCCAGGGGTGCTCGGGACAACCGACGGAGGAGGGACGGGACTGGGGATTGGTTAGGATCACCTAGTTTTACTACCCTCCTCTTTCCTTTCGCTTTGCTATGCTCCTCCGGGCATATCTGGAATTCAGTCTGCTTGTGGGCTGGGAGCAGGGGTTCAGAGCCGTCCCTATCTATGCAGTTAACACAGCTCTGCTGCCTTCCCTCCAGGGAGGTGAGCACCCCTTGGAAGGCAGGCAGTGCCCCTCGAACTGAGAGGAACGGGTTCCTGGAAGTTGGGAGAAGGAACATCTCCCACTTACTTTAGCTGCTGTACCGGCTGCATAACCTCCTCTGCCCAGTCTTTCAAACGGACTCAGGATCCCCCAATCCGCATGCCAGTACCAGATTCCTCGCGGCAGACCTATGATGCTCTCAGAAGACAGCTCTAGGTCTTGATCTTGCTTCAGCCAACGCAACCCTACACTACCGCTGCGCTGGCTGCGCCTTGCTTCCTTCCCCCTCTCCACCCCCACCCCACCCCCGCCCACCAGACACCCCCCACCCACCCAAAGGAAGAAAAAGTCAGAAGGAACTACCGCCTCCTGCTGGTAGAACGAGGTAGAAGAACCGACCACTGACCTCGGAGAGTGTGAAAAATCCTAGCACTCCAGCAAGAGACCAGGGACTTCACCAAAGTCGTCCCCTCCCCCCCCGCACCCCTCCCCCCTTGCATTCCCCTTTGCCCTTATGGAACAGAAAGCCATGTTTTTAAGCAGAGCCAGGGAAACCCAAGCCCTTCCCCTCTCTGGAGTTTCAGACCAATAAAGGAGGTGAAGGGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050860:ENSMUST00000054173:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF068887=Put_Phosphatase=WD(100=94.1)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGACAGCTGGAGACCAA
R:
CAGGGGGATGGTCTCGTAGAC
Band lengths:
353-2128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types