MmuEX0034894 @ mm10
Exon Skipping
Gene
ENSMUSG00000050860 | Phospho1
Description
phosphatase, orphan 1 [Source:MGI Symbol;Acc:MGI:2447348]
Coordinates
chr11:95828666-95830701:+
Coord C1 exon
chr11:95828666-95828775
Coord A exon
chr11:95829726-95829847
Coord C2 exon
chr11:95830433-95830701
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTCCCCTACCTGTCTCCCAGGTA
3' ss Score
10.16
5' ss Seq
TTGGCAAGT
5' ss Score
2.72
Exon sequences
Seq C1 exon
GAGCTCTGGATGACAGCTGGAGACCAACAGTTTCTAAAGGTGGTGGTTAAGATAATATACTGACAATGAGCGGGTGTTTTCCAGCTGTTGGACTACGATGCCTATCTAGG
Seq A exon
GTATGCCGTGGCCTGGTGAGGGGGGCTCCCACCTCCTTAAGCCCCATTGCTTCTCCTGTTGCCTGCTTGCTTCGGACTCTGGCAGAAACCCCACCTGCTGGCACGTGCTTCCCAGGGAATTG
Seq C2 exon
GTCTTGGATGTGCCAGCGACCCTGGCTGTGGCCCGCTAATCAGCTTCTCCCTGGCCGGCTCCCGCCGCGCCGCCTCTCGCTTGCCTCCTCCTCCTGCTCCTCTTCCCCCTGCTCCCAGGACGGCAGGATGGCTGCGCCGGGCGCGCCTCGCTTCCTCCTCACCTTCGACTTCGATGAGACCATCGTGGACGAGAACAGCGACGACTCGATCGTGCGTGCCGCGCCAGGCCAGCAACTGCCCGAGAGCCTGCGTGCCACCTATCGCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050860_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF068887=Put_Phosphatase=WD(100=81.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAGCGGGTGTTTTCCAGC
R:
GATCGAGTCGTCGCTGTTCTC
Band lengths:
257-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types