HsaEX0047214 @ hg19
Exon Skipping
Gene
ENSG00000173868 | PHOSPHO1
Description
phosphatase, orphan 1 [Source:HGNC Symbol;Acc:16815]
Coordinates
chr17:47300724-47304120:-
Coord C1 exon
chr17:47304009-47304120
Coord A exon
chr17:47303018-47303139
Coord C2 exon
chr17:47300724-47302366
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTCCCTTACCTGTCTCCCAGGTG
3' ss Score
11.18
5' ss Seq
TTGGCAAGT
5' ss Score
2.72
Exon sequences
Seq C1 exon
GAACGTGTGACGACGGCTGGAGGCCAACAGAGTCCCTACAGGTGGTGCTCACGGTAATGCACCGACAATGAGTGGCTGTTTTCCAGTTTCTGGCCTCCGCTGCCTATCTAGG
Seq A exon
GTGTGTCATGGCCTGGTGCGGGAGGCTCTTACCTCCCCAAGCCCCACTGCTTCTCCTGCTGCCCGCTTGCTTCGGACTCTGGCAGAAACCCCACCTGCTGACACGTTCCTCCTGGGGAATTG
Seq C2 exon
GACGGCAGGATGGCCGCGCAGGGCGCGCCGCGCTTCCTCCTGACCTTCGACTTCGACGAGACTATCGTGGACGAAAACAGCGACGATTCGATCGTGCGCGCCGCGCCGGGCCAGCGGCTCCCGGAGAGCCTGCGAGCCACCTACCGCGAGGGCTTCTACAACGAGTACATGCAGCGCGTCTTCAAGTACCTGGGCGAGCAGGGCGTGCGGCCGCGGGACCTGAGCGCCATCTACGAAGCCATCCCTTTGTCGCCAGGCATGAGCGACCTGCTGCAGTTTGTGGCAAAACAGGGCGCCTGCTTCGAGGTGATTCTCATCTCCGATGCCAACACCTTTGGCGTGGAGAGCTCGCTGCGCGCCGCCGGCCACCACAGCCTGTTCCGCCGCATCCTCAGCAACCCGTCGGGGCCGGATGCGCGGGGACTGCTGGCTCTGCGGCCGTTCCACACACACAGCTGCGCGCGCTGCCCCGCCAACATGTGCAAGCACAAGGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173868_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.122 C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF068887=Put_Phosphatase=WD(100=94.1)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGGTGGTGCTCACGGTAA
R:
GCGCTGCATGTACTCGTTGTA
Band lengths:
253-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)