HsaALTA0006257-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000173868 | PHOSPHO1
Description
phosphatase, orphan 1 [Source:HGNC Symbol;Acc:16815]
Coordinates
chr17:47302266-47304120:-
Coord C1 exon
chr17:47304009-47304120
Coord A exon
NA
Coord C2 exon
chr17:47302266-47302366
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
GCTCTCCCCCCTGCTCCCAGGAC
3' ss Score
9.57
Exon sequences
Seq C1 exon
GAACGTGTGACGACGGCTGGAGGCCAACAGAGTCCCTACAGGTGGTGCTCACGGTAATGCACCGACAATGAGTGGCTGTTTTCCAGTTTCTGGCCTCCGCTGCCTATCTAGG
Seq A exon
NA
Seq C2 exon
GACGGCAGGATGGCCGCGCAGGGCGCGCCGCGCTTCCTCCTGACCTTCGACTTCGACGAGACTATCGTGGACGAAAACAGCGACGATTCGATCGTGCGCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173868-2-5,2-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF068887=Put_Phosphatase=WD(100=94.1)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGTGTGACGACGGCTG
R:
CGAATCGTCGCTGTTTTCGTC
Band lengths:
202-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)