RnoEX0065566 @ rn6
Exon Skipping
Gene
ENSRNOG00000005569 | Phospho1
Description
phosphoethanolamine/phosphocholine phosphatase 1 [Source:RGD Symbol;Acc:1306182]
Coordinates
chr10:83640369-83643859:+
Coord C1 exon
chr10:83640369-83640480
Coord A exon
chr10:83641434-83641558
Coord C2 exon
chr10:83642188-83643859
Length
125 bp
Sequences
Splice sites
3' ss Seq
CCCCCCCACCTGTCTCCCAGGTA
3' ss Score
10.05
5' ss Seq
TTGGCAAGT
5' ss Score
2.72
Exon sequences
Seq C1 exon
GAGCTCTGGATGACAACTGGAGACCAACCAAGTTTCTAAAGGTGGAACTCAGGATAATACACTGACAATGAGTGGGTGCTTTCCGGTTGTTGGATTGCGATGCCTGTCTAGG
Seq A exon
GTATGCCGTGGCCTGGTGAGAGGGGCTCCCACCACCTCCTTAAGCCCCATTGCTTCTCCTGCTGCCTGCTTGCTTCGGACTCTGGCAGAAACCCCACCTGCTGGCACGTGCTTCCCAGGGAATTG
Seq C2 exon
GTCTTGGATGTGCCAGCGACCCTGGCTGTGGCCCGCTAATCAGCCTCTCCCTGGCCGGCTCCCGCCGCGCCGCCTCTCGCTTGCCCCCTCCTCCTGCTCCTCTTCCCCCTGCTCCCAGGACGGCAGGATGGCCGCGCCGGGCGCGCCTCGCTTCCTCCTGACCTTCGACTTCGATGAGACCATTGTGGATGAGAACAGCGACGACTCGATCGTGCGTGCTGCGCCAGGCCAGCAACTGCCCGAGAGCCTGCGTGCCACCTATCGGGAGGGCTACTACAATGAGTACATGCAACGCGTCTTCAAGTACCTGGGTGAGCAGGGAGTACGGCCCCGGGACCTGCGCGCTGTCTACGAGACCATCCCCCTGTCGCCAGGCATGGGCGATTTGTTGCAGTTCATAGCCAAACAGGGCTCCTGCTTCGAGGTTATTCTCATTTCGGATGCCAACACCTTCGGTGTGGAGAGTGCCCTGCGTGCCGCTGGCCACCACAGTTTATTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005569_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF068887=Put_Phosphatase=WD(100=82.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCCGGTTGTTGGATTGC
R:
CGAGTCGTCGCTGTTCTCATC
Band lengths:
243-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]