RnoALTA0029025-4/6 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000005569 | Phospho1
Description
phosphoethanolamine/phosphocholine phosphatase 1 [Source:RGD Symbol;Acc:1306182]
Coordinates
chr10:83640369-83642414:+
Coord C1 exon
chr10:83640369-83640480
Coord A exon
chr10:83642188-83642313
Coord C2 exon
chr10:83642314-83642414
Length
126 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
CAGCCTTGGGTCCTCCTCAGGTC
3' ss Score
6.93
Exon sequences
Seq C1 exon
GAGCTCTGGATGACAACTGGAGACCAACCAAGTTTCTAAAGGTGGAACTCAGGATAATACACTGACAATGAGTGGGTGCTTTCCGGTTGTTGGATTGCGATGCCTGTCTAGG
Seq A exon
GTCTTGGATGTGCCAGCGACCCTGGCTGTGGCCCGCTAATCAGCCTCTCCCTGGCCGGCTCCCGCCGCGCCGCCTCTCGCTTGCCCCCTCCTCCTGCTCCTCTTCCCCCTGCTCCCAGGACGGCAG
Seq C2 exon
GATGGCCGCGCCGGGCGCGCCTCGCTTCCTCCTGACCTTCGACTTCGATGAGACCATTGTGGATGAGAACAGCGACGACTCGATCGTGCGTGCTGCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005569-5-12,5-11,5-10,5-9,5-8,5-7-4/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF068887=Put_Phosphatase=WD(100=82.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTGGATGACAACTGGAGA
R:
CAGCACGCACGATCGAGTC
Band lengths:
206-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]