RnoALTA0029025-2/6 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000005569 | Phospho1
Description
phosphoethanolamine/phosphocholine phosphatase 1 [Source:RGD Symbol;Acc:1306182]
Coordinates
chr10:83640369-83642414:+
Coord C1 exon
chr10:83640369-83640480
Coord A exon
chr10:83642306-83642313
Coord C2 exon
chr10:83642314-83642414
Length
8 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
CCTCTTCCCCCTGCTCCCAGGAC
3' ss Score
10.82
Exon sequences
Seq C1 exon
GAGCTCTGGATGACAACTGGAGACCAACCAAGTTTCTAAAGGTGGAACTCAGGATAATACACTGACAATGAGTGGGTGCTTTCCGGTTGTTGGATTGCGATGCCTGTCTAGG
Seq A exon
GACGGCAG
Seq C2 exon
GATGGCCGCGCCGGGCGCGCCTCGCTTCCTCCTGACCTTCGACTTCGATGAGACCATTGTGGATGAGAACAGCGACGACTCGATCGTGCGTGCTGCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005569-5-12,5-11,5-10,5-9,5-8,5-7-2/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF068887=Put_Phosphatase=WD(100=82.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTGGATTGCGATGCCTGT
R:
CGTCGCTGTTCTCATCCACAA
Band lengths:
103-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]