BtaEX0026908 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000033 | PHOSPHO1
Description
phosphatase, orphan 1 [Source:HGNC Symbol;Acc:HGNC:16815]
Coordinates
chr19:37981737-37985160:+
Coord C1 exon
chr19:37981737-37981847
Coord A exon
chr19:37982654-37982775
Coord C2 exon
chr19:37983606-37985160
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTGCCCATCTCCCAGGTA
3' ss Score
9.02
5' ss Seq
TTGGCAAGT
5' ss Score
2.72
Exon sequences
Seq C1 exon
GAGCCCTGGACCGACGGCTGGAGGCCAACAATCCCTACAGGTGGTGCTCGGGGTGATGTACTGACAATGAGCGGGTGTTTTCCAGTTGCTGGCCTCCGATGCCTGTCTAGG
Seq A exon
GTATGTCGTGGCCTGGTGCGGGAGGCTCCTACTTCCCCAAGTCCCACAGCTTCTCCTGCTGCCCGCTTGCTTCGGACTCTGGCAGAAACCCCATCCGCTGACAAGTTCCTCCCAGGGAATTG
Seq C2 exon
GACGGCGGGATGGCTGCGCAGGGCTCGCCGCGCTTCCTCCTGACCTTCGACTTTGATGAGACTATCGTGGACGAAAACAGCGACGACTCGATCGTGCGCGCAGCGCCGGGCCAGCGGCTCCCGGAAAGCCTGCGTGCCACCTACCGCGAGGGCTTCTACAACGAGTACATGCAGCGCGTCTTCCAGTACCTGGGCGACCAGGGCGTGCGGCCGCGAGACCTGCGCGCCGTCTACGAGTCCATCCCGCTGTCGCCCGGCATGGGCGAGCTGCTGCAGTTTGTGGCCAAGCAGGGTTCCTGCTTTGAGGTTATTCTCATTTCAGACGCCAACACCTTTGGCGTGGAGAGCGCGCTGCGCGCCGCCGGCCACCAAGGCCTGTTCCGCCGCATCTTCAGCAACCCTTCCGGGCCCGACGCTCGGGGGCTGCTGGCGCTGCGGCCCTTCCACTCACACAGCTGCGCGCGCTGCCCCGCCAACATGTGCAAGCACAAGGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000033_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.415 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF068887=Put_Phosphatase=WD(100=94.1)
Main Inclusion Isoform:
ENSBTAT00000000037fB5207
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAACAATCCCTACAGGTGG
R:
TTGTAGAAGCCCTCGCGGTAG
Band lengths:
249-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development