BtaEX0026907 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000033 | PHOSPHO1
Description
phosphatase, orphan 1 [Source:HGNC Symbol;Acc:HGNC:16815]
Coordinates
chr19:37979882-37985160:+
Coord C1 exon
chr19:37979882-37979980
Coord A exon
chr19:37981737-37981847
Coord C2 exon
chr19:37983606-37985160
Length
111 bp
Sequences
Splice sites
3' ss Seq
GGACCTTGTATGGTTGTCAGGAG
3' ss Score
1.96
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CCTGCTGGAAAAGCTCAGAGGTCCTGTCCCCCTTTCCTCTGAGGGACTGTATTTGGTGACCACAAGAGGATTCAATCACTCAGGAGAAAGTTTCCAGAG
Seq A exon
GAGCCCTGGACCGACGGCTGGAGGCCAACAATCCCTACAGGTGGTGCTCGGGGTGATGTACTGACAATGAGCGGGTGTTTTCCAGTTGCTGGCCTCCGATGCCTGTCTAGG
Seq C2 exon
GACGGCGGGATGGCTGCGCAGGGCTCGCCGCGCTTCCTCCTGACCTTCGACTTTGATGAGACTATCGTGGACGAAAACAGCGACGACTCGATCGTGCGCGCAGCGCCGGGCCAGCGGCTCCCGGAAAGCCTGCGTGCCACCTACCGCGAGGGCTTCTACAACGAGTACATGCAGCGCGTCTTCCAGTACCTGGGCGACCAGGGCGTGCGGCCGCGAGACCTGCGCGCCGTCTACGAGTCCATCCCGCTGTCGCCCGGCATGGGCGAGCTGCTGCAGTTTGTGGCCAAGCAGGGTTCCTGCTTTGAGGTTATTCTCATTTCAGACGCCAACACCTTTGGCGTGGAGAGCGCGCTGCGCGCCGCCGGCCACCAAGGCCTGTTCCGCCGCATCTTCAGCAACCCTTCCGGGCCCGACGCTCGGGGGCTGCTGGCGCTGCGGCCCTTCCACTCACACAGCTGCGCGCGCTGCCCCGCCAACATGTGCAAGCACAAGGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000033_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF068887=Put_Phosphatase=WD(100=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCCCCTTTCCTCTGAGG
R:
GCGCTGCATGTACTCGTTGTA
Band lengths:
253-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development