GgaEX0028269 @ galGal3
Exon Skipping
Gene
ENSGALG00000001281 | PHOSPHO1
Description
NA
Coordinates
chr27:3377282-3388917:+
Coord C1 exon
chr27:3377282-3377747
Coord A exon
chr27:3378979-3379095
Coord C2 exon
chr27:3381877-3388917
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATCACCCTTATGGTTTGCAGTGA
3' ss Score
5.05
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
CCCGTGGCGCCGCGCCGGGGCTTCGTTTGCGTCGCCTTAAAGGGGCCGCGCTCGCGGCAGCCCCGGCAGCGGCGCCGGCCCCGCGCCGCTACCCAGTCGCCGGTGTCTGGCCCTGCTCCGCCGCTCTGCGGGGTGAACCGGGCGCTCCCGGGAGGTTCCGACCCGGTAAGGAAGTCTGGGGGCTGTTCAGACGTGAGTCGGCACCGGTACGGCTGCTGCCGGTACCGAGAGGTGCTGACTCCGGTAGGAGGCTGCGAGGAGCGGTGCACGGGGGCGGCTGGCGCCGGTACCGGGAAATGCCGAGCCGGCAGGGCGGGTACCGGGAGGTGCCCACTCCGTGGCAGTTTCCAATGGCTGGTGCGGCCGGTGCCGGGAGGTGTCAGTCTGGTAGGGCTTGGNNNNNNNNNNATGTGGTGGAATTCTTTGTCCAAGGTGGAAGGACACTCTCCCAGGAATCAGCTGCCCG
Seq A exon
TGAGGAGCCCAACACAGAGAGCCCTAAACGGGACCTTCAGCAAAGCGGTGCTCGGAGAGTGATGGTCTTAAAATGAAAAGGTGCTGTGAGGGTGTTGGGCTGCCATGCCTGTTTAAG
Seq C2 exon
GGTGTTGGCATGGCCAGCTCCCGGCCTCCCAAGTACCTCCTGGTCTTCGATTTTGATGAGACCATCATCAACGAGAACAGTGATGACTCCATCGTGCGGGCAGCACCAGGGCAGGCACTGCCTGAGCACATCCGGCAGAGCTTCCGCGAGGGCTTCTACAATGAGTACATGCAGCGCGTCCTGGCCTACATGGGGGACCAGGGCGTCAAGATGGGGGACTTCAAGGCTGTCTATGAGAACATTCCCCTGTCTCCGGGCATGCCTGACCTCTTCCAGTTCCTCTCCAAGAACCACGAGCTCTTCGAGATCATCCTCATCTCCGACGCCAACATGTTTGGCATTGAGTGCAAACTGAGGGCGGCCGGTTTTTACTCCCTCTTCCGCAAAATCTTCAGCAACCCGTCCAGCTTTGACAAGAGGGGTTACTTCACCTTGGGGCCCTACCACAGCCACAAGTGCCTTGACTGCCCAGCCAACATGTGCAAGCGCAAAATCCTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001281_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF068887=Put_Phosphatase=WD(100=93.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTCTCCCAGGAATCAGCT
R:
GCCTTGAAGTCCCCCATCTTG
Band lengths:
253-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]