GgaEX0028269 @ galGal4
Exon Skipping
Gene
ENSGALG00000001281 | PHOSPHO1
Description
phosphoethanolamine/phosphocholine phosphatase [Source:RefSeq peptide;Acc:NP_990176]
Coordinates
chr27:3413412-3417057:+
Coord C1 exon
chr27:3413412-3413529
Coord A exon
chr27:3414761-3414877
Coord C2 exon
chr27:3415628-3417057
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATCACCCTTATGGTTTGCAGTGA
3' ss Score
5.05
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
TTCCAGCCTTCAGGCTTTGAATAATGTTAGGAAGCACGGCCGCTTTCATTTTATTTTGGAAGGACTCCTTTTCTTTTGCAGAAGGTGGAAGGACACTCTCCCAGGAAGCAGCTGCCCG
Seq A exon
TGAGGAGCCCAACACAGAGAGCCCTAAACGGGACCTTCAGCAAAGCGGTGCTCGGAGAGTGATGGTCTTAAAATGAAAAGGTGCTGTGAGGGTGTTGGGCTGCCATGCCTGTTTAAG
Seq C2 exon
GGTGTTGGCATGGCCAGCTCCCGGCCTCCCAAGTACCTCCTGGTCTTCGATTTTGATGAGACCATCATCAACGAGAACAGTGATGACTCCATCGTGCGGGCAGCACCAGGGCAGGCACTGCCTGAGCACATCCGGCAGAGCTTCCGCGAGGGCTTCTACAATGAGTACATGCAGCGCGTCCTGGCCTACATGGGGGACCAGGGCGTCAAGATGGGGGACTTCAAGGCTGTCTATGAGAACATTCCCCTGTCTCCGGGCATGCCTGACCTCTTCCAGTTCCTCTCCAAGAACCACGAGCTCTTCGAGATCATCCTCATCTCCGACGCCAACATGTTTGGCATTGAGTGCAAACTGAGGGCGGCCGGTTTTTACTCCCTCTTCCGCAAAATCTTCAGCAACCCGTCCAGCTTTGACAAGAGGGGTTACTTCACCTTGGGGCCCTACCACAGCCACAAGTGCCTTGACTGCCCAGCCAACATGTGCAAGCGCAAAATCCTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001281-'0-3,'0-1,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF068887=Put_Phosphatase=WD(100=93.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACACTCTCCCAGGAAGC
R:
GCCTTGAAGTCCCCCATCTTG
Band lengths:
257-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]