HsaEX6023411 @ hg19
Exon Skipping
Gene
ENSG00000173868 | PHOSPHO1
Description
phosphatase, orphan 1 [Source:HGNC Symbol;Acc:16815]
Coordinates
chr17:47300732-47308128:-
Coord C1 exon
chr17:47307939-47308128
Coord A exon
chr17:47304009-47304120
Coord C2 exon
chr17:47300732-47302493
Length
112 bp
Sequences
Splice sites
3' ss Seq
TGAACTTTTGTGGTTGTCAGGAA
3' ss Score
6.56
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GCGGCTCCGGCTCCGGCTCCGGCTCCCGGGCATTTAAAGGGGACGCGGCGGCTGCCCGGGGGGGATGAGGGGCAAGTGGAGGGGACGGCTCAGACGCACATCATCCTCAGTCCCTCGGGACTGGAGGGACTCGTGAGCCGGAGCCCAGAAATCCGGGGGTGGATAAGACACCGCGTCCCCTCCAATTCCC
Seq A exon
GAACGTGTGACGACGGCTGGAGGCCAACAGAGTCCCTACAGGTGGTGCTCACGGTAATGCACCGACAATGAGTGGCTGTTTTCCAGTTTCTGGCCTCCGCTGCCTATCTAGG
Seq C2 exon
GTGTTGGATGTGCCAGCGCCTCTGGCCGTGGCCCGCTAACCAGCCTCTCCCGGGCGGGCTCCTGCCGCGCCCCCTCTCGCTTGCCCCCTCCTCCTCCTCCTCCTGCTGCTCTCCCCCCTGCTCCCAGGACGGCAGGATGGCCGCGCAGGGCGCGCCGCGCTTCCTCCTGACCTTCGACTTCGACGAGACTATCGTGGACGAAAACAGCGACGATTCGATCGTGCGCGCCGCGCCGGGCCAGCGGCTCCCGGAGAGCCTGCGAGCCACCTACCGCGAGGGCTTCTACAACGAGTACATGCAGCGCGTCTTCAAGTACCTGGGCGAGCAGGGCGTGCGGCCGCGGGACCTGAGCGCCATCTACGAAGCCATCCCTTTGTCGCCAGGCATGAGCGACCTGCTGCAGTTTGTGGCAAAACAGGGCGCCTGCTTCGAGGTGATTCTCATCTCCGATGCCAACACCTTTGGCGTGGAGAGCTCGCTGCGCGCCGCCGGCCACCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173868-'0-4,'0-2,2-4=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.108
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF068887=Put_Phosphatase=WD(100=81.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCGGGGGTGGATAAGACAC
R:
AATCGTCGCTGTTTTCGTCCA
Band lengths:
255-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)